Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

{2023.06}[foss/2023a] AlphaFold 2.3.2 (CPU-only) #785

Open
wants to merge 5 commits into
base: 2023.06-software.eessi.io
Choose a base branch
from
Open

{2023.06}[foss/2023a] AlphaFold 2.3.2 (CPU-only) #785

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
b1500c7
{2023.06}[foss/2023a] Kalign 3.4.0, absl-py 2.1.0, dm-tree 0.1.8, HH-…
boegel Oct 12, 2024
8cec803
{2023.06}[foss/2023a] AlphaFold 2.3.2 (CPU-only)
boegel Oct 12, 2024
19d12fc
use enhanced jaxlib easyblock for building jax/0.4.25-gfbf-2023a
boegel Oct 14, 2024
020789a
Merge branch '2023.06-software.eessi.io' into 2023.06-software.eessi.…
boegel Oct 17, 2024
ad072bc
add jax to list of memory-hungry builds
boegel Oct 17, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
8 changes: 8 additions & 0 deletions easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.4-2023a.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,3 +13,11 @@ easyconfigs:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/21679
from-commit: 7106f63160b1418d605882dd02ba151d099300bd
- jax-0.4.25-gfbf-2023a.eb:
options:
# see https://github.com/easybuilders/easybuild-easyblocks/pull/3486
include-easyblocks-from-commit: 59fd120c0e5330ff7266ca7aacd105d09be4389a
- AlphaFold-2.3.2-foss-2023a.eb:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/21628
from-commit: 4204600998712ff595841c34d3f6a26192ec2eb4
2 changes: 1 addition & 1 deletion eb_hooks.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -88,7 +88,7 @@ def post_ready_hook(self, *args, **kwargs):
# 'parallel' easyconfig parameter is set via EasyBlock.set_parallel in ready step based on available cores.
# here we reduce parallellism to only use half of that for selected software,
# to avoid failing builds/tests due to out-of-memory problems;
memory_hungry_build = self.name in ['libxc', 'MBX', 'TensorFlow']
memory_hungry_build = self.name in ['jax', 'libxc', 'MBX', 'TensorFlow']
# on A64FX systems, (HBM) memory is typically scarce, so we need to use fewer cores for some builds
cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
memory_hungry_build_a64fx = cpu_target == CPU_TARGET_A64FX and self.name in ['Qt5', 'ROOT']
Expand Down
Loading