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  1. duszka_2024 duszka_2024 Public

    Bulk RNA-sequencing analysis in mice CR NB (Caloric restriction with No Bedding)

    Jupyter Notebook

  2. next_cmscaller next_cmscaller Public

    Nextflow pipeline to run CMScaller R package from single cell adata object

    Python

  3. NSCLC_gender_2023 NSCLC_gender_2023 Public

    Gender analysis of single-cell atlas non-small cell lung cancer

    Jupyter Notebook

  4. honda_microbial_metabolites_2021 honda_microbial_metabolites_2021 Public

    Bulk RNA-seq analysis of mourine organoids and in vivo CD8+ sorted single-cell RNA seq analysis

    Jupyter Notebook

  5. liana_cell2cell liana_cell2cell Public

    Run liana rank agregate method on big data using nextflow and resource allocation in slurm

    R

  6. crc_atlas_circos_plot crc_atlas_circos_plot Public

    CRC atlas downstream analysis circos plot

    Jupyter Notebook