Sort features on sample abundances #372
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name: Test gig-map | |
on: [push, pull_request] | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Setup BATS | |
uses: mig4/setup-bats@v1 | |
with: | |
bats-version: 1.2.1 | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-java@v2 | |
with: | |
distribution: 'temurin' # See 'Supported distributions' for available options | |
java-version: '17' | |
- name: Install Nextflow | |
run: | | |
wget -qO- get.nextflow.io | bash | |
sudo mv nextflow /usr/local/bin/ | |
- name: set up Python3 | |
uses: actions/setup-python@v3 | |
- name: Run tests | |
working-directory: test_data | |
run: bash run_tests.sh |