Merge pull request #37 from FredHutch/howard-feedback

Fix `setup_data()`
FredHutch · Jul 1, 2024 · c1951c7 · c1951c7
2 parents 1c12148 + bf7d022
commit c1951c7
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/R/00-setup_data.R b/R/00-setup_data.R
@@ -13,7 +13,7 @@
 #'   dplyr::select(c("Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB", "Day22_RepC")) %>%
 #'   as.matrix()
 #'
-#' gimap_dataset <- setup_data(counts = example_counts_data)
+#' gimap_dataset <- setup_data(counts = example_counts)
 #'
 #' # You can see what an example dataset looks like by pulling the example gimap_dataset:
 #' gimap_dataset <- get_example_data("gimap")
@@ -23,7 +23,7 @@ setup_data <- function(counts = NULL,
                        pg_ids = NULL,
                        pg_metadata = NULL,
                        sample_metadata = NULL) {
-  new_data <- gimap_data <- list(
+  new_data <- list(
     raw_counts = NULL,
     counts_per_sample = NULL,
     transformed_data = list(