Gogis0 / barcode-demultiplexing Public

Clustering DNA reads by barcodes from raw reads. Old code written for my master-thesis.

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Name		Name	Last commit message	Last commit date
Latest commit History 33 Commits
ldtw		ldtw
small_scripts		small_scripts
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
RMD.py		RMD.py
barcode_models.py		barcode_models.py
constants.py		constants.py
dataset_distribution.py		dataset_distribution.py
delta_selector.py		delta_selector.py
delta_visualizer.py		delta_visualizer.py
double_boxplot.py		double_boxplot.py
extract_barcodes.py		extract_barcodes.py
get_distances.py		get_distances.py
hdf5_to_csv.py		hdf5_to_csv.py
linear_aligner.py		linear_aligner.py
local_dtw_test.py		local_dtw_test.py
main.py		main.py
make_big_matrix.py		make_big_matrix.py
make_dataset.py		make_dataset.py
mean_align.py		mean_align.py
my_dtw.py		my_dtw.py
my_scoring.py		my_scoring.py
notes.txt		notes.txt
plot_big_matrix.py		plot_big_matrix.py
plot_signals.py		plot_signals.py
rand_align_score.py		rand_align_score.py
sample_experiment_data.py		sample_experiment_data.py
trimmer.py		trimmer.py
trimming_test.py		trimming_test.py
util.py		util.py
visualization.py		visualization.py
visualize_errors.py		visualize_errors.py