The HUPO-PSI Consortium defines community standards for data representation in proteomics to facilitate data comparision, exchange and verification.
The Proteomics eXpression Interface is a suite of integrated APIs each targeting a different aspect of exchanging proteomics information between ProteomeXchange data partners and consumers.
Here, all the api running can be hit: http://proteomecentral.proteomexchange.org/PROXI.php
- meetings: Contains all the meeting discussions around the API.
- specs: Specifications folder including:
- The swagger.yaml file contains the current definition of the API.
- proxi-specifications.adoc : Ansible document definition, with examplesm, notations around the API.
- proxi-specifications.pdf : PDF document definition, with examplesm, notations around the API.
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Get dataset: http://wwwdev.ebi.ac.uk/pride/proxi/archive/datasets/PXD005011
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Search Datasets: http://wwwdev.ebi.ac.uk/pride/proxi/archive/datasets?pageSize=100&pageNumber=1&resultType=Full
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Get Dataset: http://ccms-internal.ucsd.edu/ProteoSAFe/proxi/datasets?resultType=full&accession=PXD000561
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Datasets by contact: http://ccms-internal.ucsd.edu/ProteoSAFe/proxi/datasets?resultType=compact&contact=Pandey&pageSize=1
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Datasets by publication: http://ccms-internal.ucsd.edu/ProteoSAFe/proxi/datasets?resultType=compact&publication=draft%20map&pageSize=1
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Datasets by species: http://ccms-internal.ucsd.edu/ProteoSAFe/proxi/datasets?resultType=compact&species=mus
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Search Datasets Mod (modification=iTRAQ): http://ccms-internal.ucsd.edu/ProteoSAFe/proxi/datasets?resultType=compact&modification=iTRAQ
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List and search Datasets
- https://repository.jpostdb.org/proxi/datasets
- https://repository.jpostdb.org/proxi/datasets?resultType=full&pageSize=5
- https://repository.jpostdb.org/proxi/datasets?contact=Ishihama
- https://repository.jpostdb.org/proxi/datasets?species=rat
- https://repository.jpostdb.org/proxi/datasets?species=rat,mus
- https://repository.jpostdb.org/proxi/datasets?modification=iTRAQ
- https://repository.jpostdb.org/proxi/datasets?instrument=Fusion
- https://repository.jpostdb.org/proxi/datasets?publication=cancer
- https://repository.jpostdb.org/proxi/datasets?accession=PXD005159
- https://repository.jpostdb.org/proxi/datasets?accession=JPST000200
- https://repository.jpostdb.org/proxi/datasets?search=colorectal
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Get Dataset
The ProXI API is an open source project, feel free to contribute following the guidelines