Skip to content

Commit

Permalink
Add reusable component test for nn
Browse files Browse the repository at this point in the history
  • Loading branch information
HanatoK committed Jun 29, 2024
1 parent db99497 commit f4d4e54
Show file tree
Hide file tree
Showing 13 changed files with 9,037 additions and 0 deletions.
8,068 changes: 8,068 additions & 0 deletions namd/tests/library/035_neuralnetwork_reuse/AutoDiff/test.colvars.out

Large diffs are not rendered by default.

Original file line number Diff line number Diff line change
@@ -0,0 +1,137 @@
configuration {
step 20
dt 5.000000e-01
}

colvar {
name re1
x -55.296515818863
}

colvar {
name re2
x -0.75889546492974
}

colvar {
name nn_output_1
x 0.42694444355919
extended_x 0.42718363121375
extended_v -1.8096015565055e-05
}

abf {
configuration {
step 20
name abf1
}

samples
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 20 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0

gradient
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 5.9866642138987 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0

z_samples
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 20 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0

z_gradient
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 5.9866642138987 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,22 @@
# step re1 re2 nn_output_1 r_nn_output_1
0 -6.21880618373937e+01 -7.80876901153670e-01 4.27348452931304e-01 4.27348452931304e-01
1 -6.18754404386361e+01 -7.81429640298883e-01 4.27087400544899e-01 4.27348312414008e-01
2 -6.15054170011305e+01 -7.82706144257008e-01 4.26872450296396e-01 4.27346551743906e-01
3 -6.11560973104512e+01 -7.83817658868057e-01 4.26690647683911e-01 4.27342076152309e-01
4 -6.07881772341548e+01 -7.84289786504087e-01 4.26522005235960e-01 4.27338674601854e-01
5 -6.03940065884916e+01 -7.84499763961354e-01 4.26348818295766e-01 4.27335730155590e-01
6 -6.00199282650134e+01 -7.84443110163427e-01 4.26238043055371e-01 4.27334079828963e-01
7 -5.96219679702364e+01 -7.84400127923323e-01 4.26159193274459e-01 4.27337761524583e-01
8 -5.92145017890831e+01 -7.83954022402982e-01 4.26065217585930e-01 4.27338778273542e-01
9 -5.87958229340519e+01 -7.82797623190361e-01 4.25982411875574e-01 4.27331353969824e-01
10 -5.83465821423875e+01 -7.81238911319785e-01 4.25889928078528e-01 4.27321182692511e-01
11 -5.78748770405068e+01 -7.79262158981625e-01 4.25796519562366e-01 4.27310793395096e-01
12 -5.74559110007995e+01 -7.77218463303311e-01 4.25853460937317e-01 4.27299903044534e-01
13 -5.70608281969374e+01 -7.74987346380529e-01 4.25947005263650e-01 4.27286305999077e-01
14 -5.66932781536531e+01 -7.72370167131764e-01 4.26005311535346e-01 4.27270581213223e-01
15 -5.63509965062035e+01 -7.69706367636336e-01 4.25997078773281e-01 4.27255905652364e-01
16 -5.60283119737676e+01 -7.67061796381563e-01 4.26005236400443e-01 4.27240725046359e-01
17 -5.57629072841305e+01 -7.64898584723930e-01 4.26151479874847e-01 4.27224521443315e-01
18 -5.55617363567288e+01 -7.62745027094128e-01 4.26359335262689e-01 4.27208896839964e-01
19 -5.54061637764065e+01 -7.60699012228543e-01 4.26611349581861e-01 4.27194935615553e-01
20 -5.52965158188627e+01 -7.58895464929744e-01 4.26944443559188e-01 4.27183631213753e-01
203 changes: 203 additions & 0 deletions namd/tests/library/035_neuralnetwork_reuse/AutoDiff/test.count
Original file line number Diff line number Diff line change
@@ -0,0 +1,203 @@
# 1
# -1.00000000000000e+00 1.00000000000000e-02 200 0

-9.95000000000000e-01 0
-9.85000000000000e-01 0
-9.75000000000000e-01 0
-9.65000000000000e-01 0
-9.55000000000000e-01 0
-9.45000000000000e-01 0
-9.35000000000000e-01 0
-9.25000000000000e-01 0
-9.15000000000000e-01 0
-9.05000000000000e-01 0
-8.95000000000000e-01 0
-8.85000000000000e-01 0
-8.75000000000000e-01 0
-8.65000000000000e-01 0
-8.55000000000000e-01 0
-8.45000000000000e-01 0
-8.35000000000000e-01 0
-8.25000000000000e-01 0
-8.15000000000000e-01 0
-8.05000000000000e-01 0
-7.95000000000000e-01 0
-7.85000000000000e-01 0
-7.75000000000000e-01 0
-7.65000000000000e-01 0
-7.55000000000000e-01 0
-7.45000000000000e-01 0
-7.35000000000000e-01 0
-7.25000000000000e-01 0
-7.15000000000000e-01 0
-7.05000000000000e-01 0
-6.95000000000000e-01 0
-6.85000000000000e-01 0
-6.75000000000000e-01 0
-6.65000000000000e-01 0
-6.55000000000000e-01 0
-6.45000000000000e-01 0
-6.35000000000000e-01 0
-6.25000000000000e-01 0
-6.15000000000000e-01 0
-6.05000000000000e-01 0
-5.95000000000000e-01 0
-5.85000000000000e-01 0
-5.75000000000000e-01 0
-5.65000000000000e-01 0
-5.55000000000000e-01 0
-5.45000000000000e-01 0
-5.35000000000000e-01 0
-5.25000000000000e-01 0
-5.15000000000000e-01 0
-5.05000000000000e-01 0
-4.95000000000000e-01 0
-4.85000000000000e-01 0
-4.75000000000000e-01 0
-4.65000000000000e-01 0
-4.55000000000000e-01 0
-4.45000000000000e-01 0
-4.35000000000000e-01 0
-4.25000000000000e-01 0
-4.15000000000000e-01 0
-4.05000000000000e-01 0
-3.95000000000000e-01 0
-3.85000000000000e-01 0
-3.75000000000000e-01 0
-3.65000000000000e-01 0
-3.55000000000000e-01 0
-3.45000000000000e-01 0
-3.35000000000000e-01 0
-3.25000000000000e-01 0
-3.15000000000000e-01 0
-3.05000000000000e-01 0
-2.95000000000000e-01 0
-2.85000000000000e-01 0
-2.75000000000000e-01 0
-2.65000000000000e-01 0
-2.55000000000000e-01 0
-2.45000000000000e-01 0
-2.35000000000000e-01 0
-2.25000000000000e-01 0
-2.15000000000000e-01 0
-2.05000000000000e-01 0
-1.95000000000000e-01 0
-1.85000000000000e-01 0
-1.75000000000000e-01 0
-1.65000000000000e-01 0
-1.55000000000000e-01 0
-1.45000000000000e-01 0
-1.35000000000000e-01 0
-1.25000000000000e-01 0
-1.15000000000000e-01 0
-1.05000000000000e-01 0
-9.50000000000000e-02 0
-8.50000000000000e-02 0
-7.50000000000000e-02 0
-6.49999999999999e-02 0
-5.49999999999999e-02 0
-4.49999999999999e-02 0
-3.50000000000000e-02 0
-2.50000000000000e-02 0
-1.50000000000000e-02 0
-5.00000000000000e-03 0
5.00000000000012e-03 0
1.50000000000001e-02 0
2.49999999999999e-02 0
3.49999999999999e-02 0
4.49999999999999e-02 0
5.49999999999999e-02 0
6.49999999999999e-02 0
7.50000000000000e-02 0
8.50000000000000e-02 0
9.50000000000000e-02 0
1.05000000000000e-01 0
1.15000000000000e-01 0
1.25000000000000e-01 0
1.35000000000000e-01 0
1.45000000000000e-01 0
1.55000000000000e-01 0
1.65000000000000e-01 0
1.75000000000000e-01 0
1.85000000000000e-01 0
1.95000000000000e-01 0
2.05000000000000e-01 0
2.15000000000000e-01 0
2.25000000000000e-01 0
2.35000000000000e-01 0
2.45000000000000e-01 0
2.55000000000000e-01 0
2.65000000000000e-01 0
2.75000000000000e-01 0
2.85000000000000e-01 0
2.95000000000000e-01 0
3.05000000000000e-01 0
3.15000000000000e-01 0
3.25000000000000e-01 0
3.35000000000000e-01 0
3.45000000000000e-01 0
3.55000000000000e-01 0
3.65000000000000e-01 0
3.75000000000000e-01 0
3.85000000000000e-01 0
3.95000000000000e-01 0
4.05000000000000e-01 0
4.15000000000000e-01 0
4.25000000000000e-01 20
4.35000000000000e-01 0
4.45000000000000e-01 0
4.55000000000000e-01 0
4.65000000000000e-01 0
4.75000000000000e-01 0
4.85000000000000e-01 0
4.95000000000000e-01 0
5.05000000000000e-01 0
5.15000000000000e-01 0
5.25000000000000e-01 0
5.35000000000000e-01 0
5.45000000000000e-01 0
5.55000000000000e-01 0
5.65000000000000e-01 0
5.75000000000000e-01 0
5.85000000000000e-01 0
5.95000000000000e-01 0
6.05000000000000e-01 0
6.15000000000000e-01 0
6.25000000000000e-01 0
6.35000000000000e-01 0
6.45000000000000e-01 0
6.55000000000000e-01 0
6.65000000000000e-01 0
6.75000000000000e-01 0
6.85000000000000e-01 0
6.95000000000000e-01 0
7.05000000000000e-01 0
7.15000000000000e-01 0
7.25000000000000e-01 0
7.35000000000000e-01 0
7.45000000000000e-01 0
7.55000000000000e-01 0
7.65000000000000e-01 0
7.75000000000000e-01 0
7.85000000000000e-01 0
7.95000000000000e-01 0
8.05000000000000e-01 0
8.15000000000000e-01 0
8.25000000000000e-01 0
8.35000000000000e-01 0
8.45000000000000e-01 0
8.55000000000000e-01 0
8.65000000000000e-01 0
8.75000000000000e-01 0
8.85000000000000e-01 0
8.95000000000000e-01 0
9.05000000000000e-01 0
9.15000000000000e-01 0
9.25000000000000e-01 0
9.35000000000000e-01 0
9.45000000000000e-01 0
9.55000000000000e-01 0
9.65000000000000e-01 0
9.75000000000000e-01 0
9.85000000000000e-01 0
9.95000000000000e-01 0
Loading

0 comments on commit f4d4e54

Please sign in to comment.