forked from Colvars/colvars
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
13 changed files
with
9,037 additions
and
0 deletions.
There are no files selected for viewing
8,068 changes: 8,068 additions & 0 deletions
8,068
namd/tests/library/035_neuralnetwork_reuse/AutoDiff/test.colvars.out
Large diffs are not rendered by default.
Oops, something went wrong.
137 changes: 137 additions & 0 deletions
137
namd/tests/library/035_neuralnetwork_reuse/AutoDiff/test.colvars.state.stripped
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,137 @@ | ||
configuration { | ||
step 20 | ||
dt 5.000000e-01 | ||
} | ||
|
||
colvar { | ||
name re1 | ||
x -55.296515818863 | ||
} | ||
|
||
colvar { | ||
name re2 | ||
x -0.75889546492974 | ||
} | ||
|
||
colvar { | ||
name nn_output_1 | ||
x 0.42694444355919 | ||
extended_x 0.42718363121375 | ||
extended_v -1.8096015565055e-05 | ||
} | ||
|
||
abf { | ||
configuration { | ||
step 20 | ||
name abf1 | ||
} | ||
|
||
samples | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 20 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
|
||
gradient | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 5.9866642138987 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
|
||
z_samples | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 20 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
|
||
z_gradient | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 5.9866642138987 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
0 0 0 0 0 0 0 0 | ||
} | ||
|
22 changes: 22 additions & 0 deletions
22
namd/tests/library/035_neuralnetwork_reuse/AutoDiff/test.colvars.traj
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,22 @@ | ||
# step re1 re2 nn_output_1 r_nn_output_1 | ||
0 -6.21880618373937e+01 -7.80876901153670e-01 4.27348452931304e-01 4.27348452931304e-01 | ||
1 -6.18754404386361e+01 -7.81429640298883e-01 4.27087400544899e-01 4.27348312414008e-01 | ||
2 -6.15054170011305e+01 -7.82706144257008e-01 4.26872450296396e-01 4.27346551743906e-01 | ||
3 -6.11560973104512e+01 -7.83817658868057e-01 4.26690647683911e-01 4.27342076152309e-01 | ||
4 -6.07881772341548e+01 -7.84289786504087e-01 4.26522005235960e-01 4.27338674601854e-01 | ||
5 -6.03940065884916e+01 -7.84499763961354e-01 4.26348818295766e-01 4.27335730155590e-01 | ||
6 -6.00199282650134e+01 -7.84443110163427e-01 4.26238043055371e-01 4.27334079828963e-01 | ||
7 -5.96219679702364e+01 -7.84400127923323e-01 4.26159193274459e-01 4.27337761524583e-01 | ||
8 -5.92145017890831e+01 -7.83954022402982e-01 4.26065217585930e-01 4.27338778273542e-01 | ||
9 -5.87958229340519e+01 -7.82797623190361e-01 4.25982411875574e-01 4.27331353969824e-01 | ||
10 -5.83465821423875e+01 -7.81238911319785e-01 4.25889928078528e-01 4.27321182692511e-01 | ||
11 -5.78748770405068e+01 -7.79262158981625e-01 4.25796519562366e-01 4.27310793395096e-01 | ||
12 -5.74559110007995e+01 -7.77218463303311e-01 4.25853460937317e-01 4.27299903044534e-01 | ||
13 -5.70608281969374e+01 -7.74987346380529e-01 4.25947005263650e-01 4.27286305999077e-01 | ||
14 -5.66932781536531e+01 -7.72370167131764e-01 4.26005311535346e-01 4.27270581213223e-01 | ||
15 -5.63509965062035e+01 -7.69706367636336e-01 4.25997078773281e-01 4.27255905652364e-01 | ||
16 -5.60283119737676e+01 -7.67061796381563e-01 4.26005236400443e-01 4.27240725046359e-01 | ||
17 -5.57629072841305e+01 -7.64898584723930e-01 4.26151479874847e-01 4.27224521443315e-01 | ||
18 -5.55617363567288e+01 -7.62745027094128e-01 4.26359335262689e-01 4.27208896839964e-01 | ||
19 -5.54061637764065e+01 -7.60699012228543e-01 4.26611349581861e-01 4.27194935615553e-01 | ||
20 -5.52965158188627e+01 -7.58895464929744e-01 4.26944443559188e-01 4.27183631213753e-01 |
203 changes: 203 additions & 0 deletions
203
namd/tests/library/035_neuralnetwork_reuse/AutoDiff/test.count
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,203 @@ | ||
# 1 | ||
# -1.00000000000000e+00 1.00000000000000e-02 200 0 | ||
|
||
-9.95000000000000e-01 0 | ||
-9.85000000000000e-01 0 | ||
-9.75000000000000e-01 0 | ||
-9.65000000000000e-01 0 | ||
-9.55000000000000e-01 0 | ||
-9.45000000000000e-01 0 | ||
-9.35000000000000e-01 0 | ||
-9.25000000000000e-01 0 | ||
-9.15000000000000e-01 0 | ||
-9.05000000000000e-01 0 | ||
-8.95000000000000e-01 0 | ||
-8.85000000000000e-01 0 | ||
-8.75000000000000e-01 0 | ||
-8.65000000000000e-01 0 | ||
-8.55000000000000e-01 0 | ||
-8.45000000000000e-01 0 | ||
-8.35000000000000e-01 0 | ||
-8.25000000000000e-01 0 | ||
-8.15000000000000e-01 0 | ||
-8.05000000000000e-01 0 | ||
-7.95000000000000e-01 0 | ||
-7.85000000000000e-01 0 | ||
-7.75000000000000e-01 0 | ||
-7.65000000000000e-01 0 | ||
-7.55000000000000e-01 0 | ||
-7.45000000000000e-01 0 | ||
-7.35000000000000e-01 0 | ||
-7.25000000000000e-01 0 | ||
-7.15000000000000e-01 0 | ||
-7.05000000000000e-01 0 | ||
-6.95000000000000e-01 0 | ||
-6.85000000000000e-01 0 | ||
-6.75000000000000e-01 0 | ||
-6.65000000000000e-01 0 | ||
-6.55000000000000e-01 0 | ||
-6.45000000000000e-01 0 | ||
-6.35000000000000e-01 0 | ||
-6.25000000000000e-01 0 | ||
-6.15000000000000e-01 0 | ||
-6.05000000000000e-01 0 | ||
-5.95000000000000e-01 0 | ||
-5.85000000000000e-01 0 | ||
-5.75000000000000e-01 0 | ||
-5.65000000000000e-01 0 | ||
-5.55000000000000e-01 0 | ||
-5.45000000000000e-01 0 | ||
-5.35000000000000e-01 0 | ||
-5.25000000000000e-01 0 | ||
-5.15000000000000e-01 0 | ||
-5.05000000000000e-01 0 | ||
-4.95000000000000e-01 0 | ||
-4.85000000000000e-01 0 | ||
-4.75000000000000e-01 0 | ||
-4.65000000000000e-01 0 | ||
-4.55000000000000e-01 0 | ||
-4.45000000000000e-01 0 | ||
-4.35000000000000e-01 0 | ||
-4.25000000000000e-01 0 | ||
-4.15000000000000e-01 0 | ||
-4.05000000000000e-01 0 | ||
-3.95000000000000e-01 0 | ||
-3.85000000000000e-01 0 | ||
-3.75000000000000e-01 0 | ||
-3.65000000000000e-01 0 | ||
-3.55000000000000e-01 0 | ||
-3.45000000000000e-01 0 | ||
-3.35000000000000e-01 0 | ||
-3.25000000000000e-01 0 | ||
-3.15000000000000e-01 0 | ||
-3.05000000000000e-01 0 | ||
-2.95000000000000e-01 0 | ||
-2.85000000000000e-01 0 | ||
-2.75000000000000e-01 0 | ||
-2.65000000000000e-01 0 | ||
-2.55000000000000e-01 0 | ||
-2.45000000000000e-01 0 | ||
-2.35000000000000e-01 0 | ||
-2.25000000000000e-01 0 | ||
-2.15000000000000e-01 0 | ||
-2.05000000000000e-01 0 | ||
-1.95000000000000e-01 0 | ||
-1.85000000000000e-01 0 | ||
-1.75000000000000e-01 0 | ||
-1.65000000000000e-01 0 | ||
-1.55000000000000e-01 0 | ||
-1.45000000000000e-01 0 | ||
-1.35000000000000e-01 0 | ||
-1.25000000000000e-01 0 | ||
-1.15000000000000e-01 0 | ||
-1.05000000000000e-01 0 | ||
-9.50000000000000e-02 0 | ||
-8.50000000000000e-02 0 | ||
-7.50000000000000e-02 0 | ||
-6.49999999999999e-02 0 | ||
-5.49999999999999e-02 0 | ||
-4.49999999999999e-02 0 | ||
-3.50000000000000e-02 0 | ||
-2.50000000000000e-02 0 | ||
-1.50000000000000e-02 0 | ||
-5.00000000000000e-03 0 | ||
5.00000000000012e-03 0 | ||
1.50000000000001e-02 0 | ||
2.49999999999999e-02 0 | ||
3.49999999999999e-02 0 | ||
4.49999999999999e-02 0 | ||
5.49999999999999e-02 0 | ||
6.49999999999999e-02 0 | ||
7.50000000000000e-02 0 | ||
8.50000000000000e-02 0 | ||
9.50000000000000e-02 0 | ||
1.05000000000000e-01 0 | ||
1.15000000000000e-01 0 | ||
1.25000000000000e-01 0 | ||
1.35000000000000e-01 0 | ||
1.45000000000000e-01 0 | ||
1.55000000000000e-01 0 | ||
1.65000000000000e-01 0 | ||
1.75000000000000e-01 0 | ||
1.85000000000000e-01 0 | ||
1.95000000000000e-01 0 | ||
2.05000000000000e-01 0 | ||
2.15000000000000e-01 0 | ||
2.25000000000000e-01 0 | ||
2.35000000000000e-01 0 | ||
2.45000000000000e-01 0 | ||
2.55000000000000e-01 0 | ||
2.65000000000000e-01 0 | ||
2.75000000000000e-01 0 | ||
2.85000000000000e-01 0 | ||
2.95000000000000e-01 0 | ||
3.05000000000000e-01 0 | ||
3.15000000000000e-01 0 | ||
3.25000000000000e-01 0 | ||
3.35000000000000e-01 0 | ||
3.45000000000000e-01 0 | ||
3.55000000000000e-01 0 | ||
3.65000000000000e-01 0 | ||
3.75000000000000e-01 0 | ||
3.85000000000000e-01 0 | ||
3.95000000000000e-01 0 | ||
4.05000000000000e-01 0 | ||
4.15000000000000e-01 0 | ||
4.25000000000000e-01 20 | ||
4.35000000000000e-01 0 | ||
4.45000000000000e-01 0 | ||
4.55000000000000e-01 0 | ||
4.65000000000000e-01 0 | ||
4.75000000000000e-01 0 | ||
4.85000000000000e-01 0 | ||
4.95000000000000e-01 0 | ||
5.05000000000000e-01 0 | ||
5.15000000000000e-01 0 | ||
5.25000000000000e-01 0 | ||
5.35000000000000e-01 0 | ||
5.45000000000000e-01 0 | ||
5.55000000000000e-01 0 | ||
5.65000000000000e-01 0 | ||
5.75000000000000e-01 0 | ||
5.85000000000000e-01 0 | ||
5.95000000000000e-01 0 | ||
6.05000000000000e-01 0 | ||
6.15000000000000e-01 0 | ||
6.25000000000000e-01 0 | ||
6.35000000000000e-01 0 | ||
6.45000000000000e-01 0 | ||
6.55000000000000e-01 0 | ||
6.65000000000000e-01 0 | ||
6.75000000000000e-01 0 | ||
6.85000000000000e-01 0 | ||
6.95000000000000e-01 0 | ||
7.05000000000000e-01 0 | ||
7.15000000000000e-01 0 | ||
7.25000000000000e-01 0 | ||
7.35000000000000e-01 0 | ||
7.45000000000000e-01 0 | ||
7.55000000000000e-01 0 | ||
7.65000000000000e-01 0 | ||
7.75000000000000e-01 0 | ||
7.85000000000000e-01 0 | ||
7.95000000000000e-01 0 | ||
8.05000000000000e-01 0 | ||
8.15000000000000e-01 0 | ||
8.25000000000000e-01 0 | ||
8.35000000000000e-01 0 | ||
8.45000000000000e-01 0 | ||
8.55000000000000e-01 0 | ||
8.65000000000000e-01 0 | ||
8.75000000000000e-01 0 | ||
8.85000000000000e-01 0 | ||
8.95000000000000e-01 0 | ||
9.05000000000000e-01 0 | ||
9.15000000000000e-01 0 | ||
9.25000000000000e-01 0 | ||
9.35000000000000e-01 0 | ||
9.45000000000000e-01 0 | ||
9.55000000000000e-01 0 | ||
9.65000000000000e-01 0 | ||
9.75000000000000e-01 0 | ||
9.85000000000000e-01 0 | ||
9.95000000000000e-01 0 |
Oops, something went wrong.