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output_vcf #162

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Shreya-droid opened this issue Aug 1, 2022 · 1 comment
Open

output_vcf #162

Shreya-droid opened this issue Aug 1, 2022 · 1 comment

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@Shreya-droid
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Where this variable is defined "output_vcf" in hap.py script ??
@b-math
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b-math commented Aug 9, 2022

Hi, I'm not sure I understand your question correctly, but if you want to export a vcf containing all variants, you can append the -V (uppercase) flag to your command.

Best regards,
Barbara

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@Shreya-droid @b-math