71 add khiops parameters to predictor constructors #515
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--- | |
name: Unit Tests | |
env: | |
DEFAULT_SAMPLES_REVISION: main | |
DEFAULT_KHIOPS_DESKTOP_REVISION: 10.2.3-b.4 | |
on: | |
workflow_dispatch: | |
inputs: | |
samples-revision: | |
default: main | |
description: Git tag, branch or commit for the khiops-samples repository | |
image-tag: | |
default: latest | |
description: Development Docker Image Tag | |
khiops-desktop-revision: | |
default: 10.2.3-b.4 | |
description: Khiops Windows Desktop Application Version | |
run-long-tests: | |
type: boolean | |
required: false | |
default: false | |
description: Execute long tests | |
pull_request: | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: true | |
jobs: | |
run: | |
runs-on: ubuntu-22.04 | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
container: | |
# 'latest' default image tag cannot be set as an environment variable, | |
# because the `env` context is only accessible at the step level; | |
# hence, it is hard-coded | |
image: |- | |
ghcr.io/khiopsml/khiops-python/khiopspydev-ubuntu22.04:${{ inputs.image-tag || '10.2.3-b.4.with_conda-forge_10.2.3-b.4' }} | |
credentials: | |
username: ${{ github.actor }} | |
password: ${{ secrets.GITHUB_TOKEN }} | |
permissions: | |
id-token: write | |
contents: read | |
checks: write | |
packages: read | |
steps: | |
- name: Checkout sources | |
uses: actions/checkout@v4 | |
with: | |
# Get Git tags so that versioneer can function correctly | |
# See issue https://github.com/actions/checkout/issues/701 | |
fetch-depth: 0 | |
# We move SAMPLES_REVISION to the environment so that we can use | |
# them in both push and workflow_dispatch events | |
- name: Move SAMPLES_REVISION to the environment (push event) | |
if: github.event_name == 'push' | |
run: echo "SAMPLES_REVISION=${DEFAULT_SAMPLES_REVISION}" >> "$GITHUB_ENV" | |
- name: Move SAMPLES_REVISION to the environment (workflow_dispatch event) | |
if: github.event_name == 'workflow_dispatch' | |
run: echo "SAMPLES_REVISION=${{ inputs.samples-revision }}" >> "$GITHUB_ENV" | |
- name: Checkout Khiops samples | |
uses: actions/checkout@v4 | |
with: | |
repository: khiopsml/khiops-samples | |
ref: ${{ env.SAMPLES_REVISION }} | |
token: ${{ secrets.GITHUB_TOKEN }} | |
path: khiops-samples | |
- name: Setup and Install Test Requirements | |
if: success() || failure() | |
run: | | |
CONDA="/root/miniforge3/bin/conda" | |
# Native Khiops-based Conda environment, and | |
# `khiops-core`-based Conda environment | |
CONDA_ENVS="py${{ matrix.python-version }} py${{ matrix.python-version }}_conda" | |
for CONDA_ENV in $CONDA_ENVS | |
do | |
mkdir -p -m u+rwx reports/"$CONDA_ENV" | |
# install within the conda environments without activating them | |
$CONDA install -y -n "$CONDA_ENV" unittest-xml-reporting | |
$CONDA install -y -n "$CONDA_ENV" --file test-requirements.txt | |
done | |
- name: Install khiops-python dependencies | |
if: success() || failure() | |
run: | | |
# The following git command is required, | |
# as the Git repository is in a directory the current user does not own, | |
# Python versioneer fails to compute the current version correctly otherwise | |
git config --global --add safe.directory $(realpath .) | |
CONDA="/root/miniforge3/bin/conda" | |
# Native Khiops-based Conda environment, and | |
# `khiops-core`-based Conda environment | |
CONDA_ENVS="py${{ matrix.python-version }} py${{ matrix.python-version }}_conda" | |
for CONDA_ENV in $CONDA_ENVS | |
do | |
$CONDA run --no-capture-output -n "$CONDA_ENV" python setup.py egg_info | |
$CONDA install -y -n "$CONDA_ENV" `grep -v "^\[" khiops.egg-info/requires.txt` | |
rm -rf khiops.egg-info | |
done | |
- name: Prepare Unit Tests Environment | |
if: github.ref != 'dev' && github.ref != 'main' && ! inputs.run-long-tests | |
run: echo "UNITTEST_ONLY_SHORT_TESTS=true" >> "$GITHUB_ENV" | |
- name: Run Unit Tests | |
env: | |
KHIOPS_SAMPLES_DIR: ${{ github.workspace }}/khiops-samples | |
KHIOPS_DOCKER_RUNNER_URL: https://localhost:11000 | |
KHIOPS_DOCKER_RUNNER_SHARED_DIR: /tmp/sandbox | |
KHIOPS_RUNNER_SERVICE_PATH: /scripts/run_service.sh | |
# Force > 2 CPU cores to launch mpiexec | |
KHIOPS_PROC_NUMBER: 4 | |
# Oversubscribe for MPI 4.x | |
rmaps_base_oversubscribe: true | |
# Oversubscribe for MPI > 4.x | |
OMPI_MCA_rmaps_base_oversubscribe: true | |
PRTE_MCA_rmaps_default_mapping_policy: :oversubscribe | |
run: | | |
# This is needed so that the Git tag is parsed and the khiops-python | |
# version is retrieved | |
git config --global --add safe.directory $(realpath .) | |
CONDA="/root/miniforge3/bin/conda" | |
# Native Khiops-based Conda environment, and | |
# `khiops-core`-based Conda environment | |
CONDA_ENVS="py${{ matrix.python-version }} py${{ matrix.python-version }}_conda" | |
for CONDA_ENV in $CONDA_ENVS | |
do | |
$CONDA run --no-capture-output -n "$CONDA_ENV" coverage run -m xmlrunner -o "reports/py${{ matrix.python-version }}" -v | |
$CONDA run --no-capture-output -n "$CONDA_ENV" coverage report -m | |
$CONDA run --no-capture-output -n "$CONDA_ENV" coverage xml -o "reports/$CONDA_ENV/py-coverage.xml" | |
done | |
- name: Display Unit Test Reports | |
uses: dorny/test-reporter@v1 | |
with: | |
name: Unit Tests ${{ matrix.python-version }} | |
path: >- | |
reports/py${{ matrix.python-version }}/TEST-tests.*.*.xml, | |
reports/py${{ matrix.python-version }}_conda/TEST-tests.*.*.xml | |
reporter: java-junit | |
path-replace-backslashes: 'true' # Necessary for windows paths | |
- name: Upload Test Reports as Artifacts | |
uses: actions/upload-artifact@v4 | |
with: | |
name: test-reports-${{ matrix.python-version }} | |
path: |- | |
reports/py${{ matrix.python-version }}/TEST-tests.*.*.xml | |
reports/py${{ matrix.python-version }}/py-coverage.xml | |
reports/py${{ matrix.python-version }}_conda/TEST-tests.*.*.xml | |
reports/py${{ matrix.python-version }}_conda/py-coverage.xml | |
tests/resources/scenario_generation/*/ref/*._kh | |
tests/resources/scenario_generation/*/output/*._kh | |
tests/resources/*/output_reports/*.txt | |
tests/resources/*/ref_reports/*.txt | |
tests/resources/dictionary/ref_kdic/*.kdic | |
tests/resources/dictionary/output_kdic/*.kdic | |
tests/resources/dictionary/copy_output_kdic/*.kdic | |
tests/resources/general_options/general_options/*/*._kh | |
retention-days: 7 | |
check-khiops-integration-on-windows: | |
runs-on: windows-2019 | |
steps: | |
- name: Download the Khiops Desktop NSIS Installer | |
shell: pwsh | |
run: | | |
$KHIOPS_DESKTOP_REVISION = '${{ inputs.khiops-desktop-revision || env.DEFAULT_KHIOPS_DESKTOP_REVISION }}' | |
$KHIOPS_DOWNLOAD_URL = "https://github.com/KhiopsML/khiops/releases/download/${KHIOPS_DESKTOP_REVISION}/khiops-${KHIOPS_DESKTOP_REVISION}-setup.exe" | |
Invoke-WebRequest "${KHIOPS_DOWNLOAD_URL}" ` | |
-OutFile .\khiops-setup.exe ` | |
-UseBasicParsing; ` | |
Unblock-File .\khiops-setup.exe | |
- name: Install the Khiops Desktop Application | |
shell: pwsh | |
run: | | |
# Execute the installer | |
$ErrorActionPreference = 'Stop' | |
$ProgressPreference = 'SilentlyContinue' | |
Start-Process ` | |
-FilePath .\khiops-setup.exe ` | |
-ArgumentList '/S' ` | |
-Wait | |
- name: Checkout sources | |
uses: actions/checkout@v4 | |
with: | |
# Get Git tags so that versioneer can function correctly | |
# See issue https://github.com/actions/checkout/issues/701 | |
fetch-depth: 0 | |
- name: Setup Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.11' | |
- name: Install khiops-python dev dependencies | |
shell: pwsh | |
run: | | |
# The following git command is required, | |
# as the Git repository is in a directory the current user does not own, | |
# Python versioneer fails to compute the current version correctly otherwise | |
git config --global --add safe.directory $(Resolve-Path '.' | % {$_.toString()}); ` | |
python setup.py egg_info; ` | |
Get-Content .\khiops.egg-info\requires.txt ` | |
| Select-String -Pattern '^\[' -NotMatch ` | |
| % {$_.Line} ` | |
| ForEach-Object {pip install $_.toString()}; ` | |
Remove-Item -r -force khiops.egg-info | |
- name: Setup and Install Test Requirements | |
run: pip install -r test-requirements.txt | |
- name: Test Khiops Integration | |
env: | |
KHIOPS_PROC_NUMBER: 4 | |
shell: pwsh | |
run: | | |
# Refresh environment variables by using the Chocolatey tool | |
# Otherwise, the env vars set in the registry by the Khiops installer do not get updated | |
# See also https://github.com/actions/runner-images/discussions/6065#discussioncomment-3517318 | |
Import-Module $env:ChocolateyInstall\helpers\chocolateyProfile.psm1 | |
refreshenv | |
python -c "import khiops.core as kh; kh.get_runner().print_status()" | |
check-mpiexec-on-linux: | |
strategy: | |
fail-fast: false | |
matrix: | |
container: [ubuntu22.04, rocky8, rocky9] | |
runs-on: ubuntu-latest | |
container: | |
# 'latest' default image tag cannot be set as an environment variable, | |
# because the `env` context is only accessible at the step level; | |
# hence, it is hard-coded | |
image: |- | |
ghcr.io/khiopsml/khiops-python/khiopspydev-${{ matrix.container }}:${{ inputs.image-tag || '10.2.3-b.4.with_conda-forge_10.2.3-b.4' }} | |
credentials: | |
username: ${{ github.actor }} | |
password: ${{ secrets.GITHUB_TOKEN }} | |
permissions: | |
id-token: write | |
contents: read | |
checks: write | |
packages: read | |
steps: | |
- name: Checkout sources | |
uses: actions/checkout@v4 | |
with: | |
# Get Git tags so that versioneer can function correctly | |
# See issue https://github.com/actions/checkout/issues/701 | |
fetch-depth: 0 | |
- name: Install khiops-python dev dependencies | |
run: | | |
# The following git command is required, | |
# as the Git repository is in a directory the current user does not own, | |
# Python versioneer fails to compute the current version correctly otherwise | |
git config --global --add safe.directory $(realpath .) | |
python setup.py egg_info | |
pip install `grep -v "^\[" khiops.egg-info/requires.txt` | |
rm -rf khiops.egg-info | |
- name: Setup and Install Test Requirements | |
run: | | |
pip install -r test-requirements.txt | |
- name: Launch proper MPI awareness test | |
env: | |
# Force > 2 CPU cores to launch mpiexec | |
KHIOPS_PROC_NUMBER: 4 | |
run: |- | |
# Make sure MPI support is not loaded through env modules | |
# Note: As Docker container's shell is non-interactive, environment | |
# modules are currently not initializing the shell anyway | |
if [ -n "$MODULESHOME" ]; then module unload mpi; fi | |
python -m unittest -v tests.test_khiops_integrations.KhiopsRunnerEnvironmentTests.test_runner_has_mpiexec_on_linux |