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80 Open 37 Closed
80 Open 37 Closed
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Issues list

biolog data
#260 opened Oct 17, 2024 by realmarcin
Jenkins build fails due to old python version
#256 opened Sep 26, 2024 by hrshdhgd
7
core vs merge repo node and edge header vs column content differences
#255 opened Sep 26, 2024 by realmarcin
ROBOT default memory 64G not enough?
#254 opened Sep 26, 2024 by realmarcin
potential duplicate assay nodes
#253 opened Sep 26, 2024 by realmarcin
A few BactoTraits columns that are missing
#252 opened Sep 19, 2024 by realmarcin
2
exclude duplicate UniProt proteomes and relax protein count filter
#251 opened Sep 18, 2024 by realmarcin
1
assign ENVO for bacdive isolation_sources
#248 opened Sep 17, 2024 by realmarcin
NCBITaxon to CHEBI via location_of -- weird location and also predicate upgrade
#246 opened Sep 16, 2024 by realmarcin
2
revisit taxonomy trimming, check top level roots
#239 opened Aug 31, 2024 by realmarcin
two subclass edges for strain
#235 opened Aug 29, 2024 by realmarcin
2
~90 mediadive edges have empty subjects
#231 opened Aug 24, 2024 by realmarcin
disbiome transform happens without specifying in transform.py transforms list
#218 opened Aug 21, 2024 by realmarcin
upa_nodes.tsv: All rows should have 14 columns
#204 opened Aug 4, 2024 by hrshdhgd
@bsantan
2
ec_nodes.tsv columns are scrambled
#203 opened Aug 4, 2024 by hrshdhgd
@bsantan
reconcile oaklib .cache db files VS downloaded ontologies
#202 opened Aug 2, 2024 by realmarcin
2
ingest GTDB
#198 opened Jul 23, 2024 by realmarcin
multiprocessing connection errors on NERSC
#197 opened Jul 23, 2024 by realmarcin
ingest BacDive "sample type" data
#192 opened Jul 2, 2024 by realmarcin
link Bacdive isolation source categories to each other to represent hierarchy
#191 opened Jul 1, 2024 by realmarcin
1
KG- microbe hub hierarchy enhancement New feature or request
#185 opened Jun 26, 2024 by hrshdhgd
1
validate Omnimicrobe text mined data
#183 opened Jun 20, 2024 by realmarcin
ingest PREGO knowledgebase data sources
#182 opened Jun 20, 2024 by realmarcin
IJSEM phenotype db data sources
#180 opened Jun 19, 2024 by realmarcin
1
3
ingest microbeatlas environments data sources
#177 opened Jun 12, 2024 by realmarcin
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