ENH: Add overwrite (#367)

.circleci/config.yml

@@ -1,17 +1,17 @@
-version: 2
+version: 2.1
 jobs:
   build_docs:
     docker:
-      - image: cimg/python:3.9.12
+      - image: cimg/python:3.12.6
     steps:
       # Get our data and merge with upstream
       - checkout
       - run: sudo apt update && sudo apt install graphviz-dev graphviz
       - run: python -m pip install --quiet --upgrade --user pip
-      - run: python -m pip install --quiet --upgrade --user numpy scipy git+https://github.com/mne-tools/mne-python@main numpydoc sphinx sphinx_fontawesome sphinx_bootstrap_theme pygraphviz
-      - run: python -c "import mne; mne.sys_info()"
-      - run: python setup.py develop --user
-      - run: cd doc && make html
+      - run: python -m pip install --upgrade --user git+https://github.com/mne-tools/mne-python@main numpydoc sphinx sphinx_fontawesome sphinx_bootstrap_theme pygraphviz
+      - run: mne sys_info
+      - run: pip install -ve .
+      - run: make -C doc html
 
       - store_artifacts:
           path: doc/_build/html/
@@ -25,7 +25,7 @@ jobs:
 
   deploy:
     docker:
-      - image: cimg/python:3.9.12
+      - image: cimg/python:3.12.6
     steps:
       - add_ssh_keys:
           fingerprints:
@@ -55,7 +55,6 @@ jobs:
             git push origin main
 
 workflows:
-  version: 2
   build_and_deploy:
     jobs:
       - build_docs

.github/dependabot.yml

@@ -0,0 +1,10 @@
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "monthly"
+    groups:
+      actions:
+        patterns:
+          - "*"

mnefun/_ssp.py

@@ -388,15 +388,21 @@ def do_preprocessing_combined(p, subjects, run_indices):
             print('  obtained %d epochs from %d events.' % (len(ecg_epochs),
                                                             len(ecg_events)))
             if len(ecg_epochs) >= 20:
-                write_events(ecg_eve, ecg_epochs.events)
+                kwargs = dict()
+                if "overwrite" in get_args(write_events):
+                    kwargs["overwrite"] = True
+                write_events(ecg_eve, ecg_epochs.events, **kwargs)
                 ecg_epochs.save(ecg_epo, **_get_epo_kwargs())
                 desc_prefix = 'ECG-%s-%s' % tuple(ecg_t_lims)
                 pr = compute_proj_wrap(
                     ecg_epochs, p.proj_ave, n_grad=proj_nums[0][0],
                     n_mag=proj_nums[0][1], n_eeg=proj_nums[0][2],
                     desc_prefix=desc_prefix, **proj_kwargs)
                 assert len(pr) == np.sum(proj_nums[0][::p_sl])
-                write_proj(ecg_proj, pr)
+                kwargs = dict()
+                if "overwrite" in get_args(write_events):
+                    kwargs["overwrite"] = True
+                write_proj(ecg_proj, pr, **kwargs)
                 projs.extend(pr)
             else:
                 _raise_bad_epochs(raw, ecg_epochs, ecg_events, 'ECG',