Merge branch 'master' of https://github.com/LabTranslationalArchitect… #12
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| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| name: R | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: '4.0.3'} | |
| - {os: windows-latest, r: '4.0.3'} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: install latex | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get install texlive-latex-base | |
| - name: check R | |
| if: runner.os == 'Linux' | |
| run: | | |
| R --version | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: rcmdcheck | |
| - uses: r-lib/actions/check-r-package@v2 | |
| - name: Set up R ${{ matrix.config.r }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Query dependencies | |
| run: | | |
| install.packages(c('remotes', 'BiocManager'), INSTALL_opts="--no-multiarch") | |
| options(repos = c(getOption("repos"), BiocManager::repositories())) | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), "depends.Rds", version = 2) | |
| shell: Rscript {0} | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck","pandoc", "rlang", "vctrs", "processx"), INSTALL_opts="--no-multiarch") | |
| remotes::install_deps(dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--no-multiarch"), error_on = "error") | |
| shell: Rscript {0} |