update r.yml

.github/workflows/r.yml

@@ -47,8 +47,6 @@ jobs:
           R --version
         
       - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: rcmdcheck
       - uses: r-lib/actions/check-r-package@v2
 
       - name: Set up R  ${{ matrix.config.r }}

R/combine_bam.R

@@ -70,9 +70,9 @@
 #'   usually due to many indels which in turn are caused by loose thresholds
 #'   used in the alignment process. High numbers of consecutive deletions
 #'   (nucleotides present in the reference sequence but not in the read) may be
-#'   an indication of reads mapping on exon-exon junctions. Despite this
+#'   an indication of reads mapping on exon-exon junctions. Since this
 #'   eventuality is not in accordance with alignments based on transcript
-#'   coordinates, stretches  of deletions can be included by errors or
+#'   coordinates, stretches of deletions can be included by errors or
 #'   inaccurate transcript annotation and should be discarded. In fact,
 #'   \strong{riboWaltz} deliberately identifies the length of the reference
 #'   sequences covered by the reads with the reads length, referring to it as