Skip to content

Issues: LieberInstitute/recount3

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

20 Open 34 Closed
20 Open 34 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

database disk image is malformed
#54 opened Jul 3, 2024 by EperLuo
1
Switch to using rlang and cli enhancement New feature or request
#51 opened Dec 1, 2023 by lcolladotor bioc v3.21
Add more data to recount3 depends on new monorail output enhancement New feature or request
#50 opened Dec 1, 2023 by lcolladotor
4 tasks
Translate course and intro documentation to Spanish enhancement New feature or request
#49 opened Dec 1, 2023 by lcolladotor bioc v3.23
Short videos + guide collating them enhancement New feature or request
#48 opened Dec 1, 2023 by lcolladotor bioc v3.23
Develop a 2 day (max 3) workshop / short course enhancement New feature or request
#47 opened Dec 1, 2023 by lcolladotor bioc v3.22
Create guides for GTEx and TCGA data enhancement New feature or request
#46 opened Dec 1, 2023 by lcolladotor bioc v3.22
Split documentation to simplify onboarding process for new users enhancement New feature or request
#45 opened Dec 1, 2023 by lcolladotor bioc v3.21
Guide for creating and potentially sharing collections enhancement New feature or request
#44 opened Dec 1, 2023 by lcolladotor bioc v3.21
Add recount-brain collection to recount3 enhancement New feature or request
#43 opened Dec 1, 2023 by lcolladotor bioc v3.21
Upload recount3 data to AnVIL enhancement New feature or request
#42 opened Dec 1, 2023 by lcolladotor bioc v3.21
Add support for data hosted in AnVIL enhancement New feature or request
#41 opened Nov 30, 2023 by lcolladotor bioc v3.21
[Feature Request] Restore information from Matrix Market files in recount3 question Further information is requested
#40 opened Nov 28, 2023 by jiapeiyuan17
3
[BUG] different row counts implied by arguments error at expand_sra_attributes() bug Something isn't working
#35 opened Aug 23, 2023 by ivokwee bioc v3.20
2
Error when loading an SRA project - "'NA' indices are not (yet?) supported for sparse Matrices" bug Something isn't working
#34 opened Jul 21, 2023 by aobermayer4 bioc v3.20
recount::getTPM(rse) method bug Something isn't working
#30 opened Jan 16, 2023 by SoniaRuiz
1 task
bioc v3.20
2
Make the organism and annotation options more general enhancement New feature or request
#16 opened Feb 28, 2022 by lcolladotor bioc v3.21
@lcolladotor
RNAseq datasets unavailable depends on new monorail output
#13 opened Dec 6, 2021 by danielemalpetti
2
[FEATURE] Subsetting SRA projects by samples prior to making the RangedSummarizedExperiment object enhancement New feature or request
#11 opened Nov 29, 2021 by schelhorn bioc v3.20
annotation version / genome enhancement New feature or request
#1 opened Aug 17, 2020 by kasperdanielhansen bioc v3.20
1
ProTip! Follow long discussions with comments:>50.