NBDEV_Prepare

MannLabs · Dec 3, 2023 · ac35127 · ac35127
1 parent 1a7d63a
commit ac35127
Showing 1 changed file with 6 additions and 117 deletions.
diff --git a/nbs/04_feature_finding.ipynb b/nbs/04_feature_finding.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -94,7 +94,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -199,7 +199,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -234,7 +234,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -336,7 +336,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -404,105 +404,6 @@
     "plt.show()"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": 6,
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "array([10.2, 20. , 10. ])"
-      ]
-     },
-     "execution_count": 6,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "source": [
-    "index = 0\n",
-    "centroids[row_borders[index]:row_borders[index]+rowwise_peaks[index]]"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 7,
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "[10, 20, 30, 10.2, 20, 10, 30, 40]"
-      ]
-     },
-     "execution_count": 7,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "source": [
-    "[10, 20, 30,\n",
-    " 10.2, 20,\n",
-    " 10, 30, 40]"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 8,
-   "metadata": {},
-   "outputs": [
-    {
-     "ename": "NameError",
-     "evalue": "name 'ctrd' is not defined",
-     "output_type": "error",
-     "traceback": [
-      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
-      "\u001b[0;31mNameError\u001b[0m                                 Traceback (most recent call last)",
-      "\u001b[1;32m/Users/flq567/programming/alphapept/nbs/04_feature_finding.ipynb Cell 12\u001b[0m line \u001b[0;36m<cell line: 2>\u001b[0;34m()\u001b[0m\n\u001b[1;32m      <a href='vscode-notebook-cell:/Users/flq567/programming/alphapept/nbs/04_feature_finding.ipynb#X14sZmlsZQ%3D%3D?line=0'>1</a>\u001b[0m plt\u001b[39m.\u001b[39mfigure(figsize\u001b[39m=\u001b[39m(\u001b[39m5\u001b[39m,\u001b[39m5\u001b[39m))\n\u001b[1;32m      <a href='vscode-notebook-cell:/Users/flq567/programming/alphapept/nbs/04_feature_finding.ipynb#X14sZmlsZQ%3D%3D?line=1'>2</a>\u001b[0m \u001b[39mfor\u001b[39;00m i, _ \u001b[39min\u001b[39;00m \u001b[39menumerate\u001b[39m(row_borders):\n\u001b[0;32m----> <a href='vscode-notebook-cell:/Users/flq567/programming/alphapept/nbs/04_feature_finding.ipynb#X14sZmlsZQ%3D%3D?line=2'>3</a>\u001b[0m     \u001b[39mprint\u001b[39m(i, ctrd, np\u001b[39m.\u001b[39mones_like(ctrd)\u001b[39m*\u001b[39mi)\n\u001b[1;32m      <a href='vscode-notebook-cell:/Users/flq567/programming/alphapept/nbs/04_feature_finding.ipynb#X14sZmlsZQ%3D%3D?line=3'>4</a>\u001b[0m     ctrd \u001b[39m=\u001b[39m centroids[_\u001b[39m-\u001b[39mrowwise_peaks[i]:_]\n\u001b[1;32m      <a href='vscode-notebook-cell:/Users/flq567/programming/alphapept/nbs/04_feature_finding.ipynb#X14sZmlsZQ%3D%3D?line=4'>5</a>\u001b[0m     plt\u001b[39m.\u001b[39mplot(ctrd, np\u001b[39m.\u001b[39mones_like(ctrd)\u001b[39m*\u001b[39mi, \u001b[39m'\u001b[39m\u001b[39m.\u001b[39m\u001b[39m'\u001b[39m)\n",
-      "\u001b[0;31mNameError\u001b[0m: name 'ctrd' is not defined"
-     ]
-    },
-    {
-     "data": {
-      "text/plain": [
-       "<Figure size 360x360 with 0 Axes>"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
-   "source": [
-    "plt.figure(figsize=(5,5))\n",
-    "for i, _ in enumerate(row_borders):\n",
-    "    print(i, ctrd, np.ones_like(ctrd)*i)\n",
-    "    ctrd = centroids[_-rowwise_peaks[i]:_]\n",
-    "    plt.plot(ctrd, np.ones_like(ctrd)*i, '.')"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "array([3, 6, 9])"
-      ]
-     },
-     "execution_count": 5,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "source": [
-    "10, 20, 30\n",
-    "10.2, 20\n",
-    "10, 30, 40"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -3049,21 +2950,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "base",
+   "display_name": "python3",
    "language": "python",
    "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.8.15"
   }
  },
  "nbformat": 4,