Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Mod site for C-term modifications #209

Open
mo-sameh opened this issue Sep 24, 2024 · 0 comments
Open

Mod site for C-term modifications #209

mo-sameh opened this issue Sep 24, 2024 · 0 comments
Labels
question Further information is requested

Comments

@mo-sameh
Copy link
Collaborator

To clarify, I just want to confirm: In Alphabase format, shouldn't C-terminal modifications have a mod site of -1 e.g. check following docstring while mod site 1 is reserved for non-terminal modifications of the first amino acid? If so, is this just a typo in the following docstring?

def parse_mod_feature(
nAA: int, mod_names: List[str], mod_sites: List[int]
) -> np.ndarray:
"""
Get modification feature of a given peptide (len=nAA).
Note that `site=0` is for peptide N-term modification,
`site=1` is for peptide C-term modification, and
`1<=site<=nAA` is for residue modifications on the peptide.

@mo-sameh mo-sameh added the question Further information is requested label Sep 24, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
question Further information is requested
Projects
None yet
Development

No branches or pull requests

1 participant