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25 Open 55 Closed
25 Open 55 Closed
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Issues list

@C/N-term mods do not create in silico modified peptides bug Something isn't working
#214 opened Nov 6, 2024 by Shinya-Watanabe
Why is "rescore" is not available as a task_choice
#212 opened Oct 8, 2024 by mhamaneh
1
Cannot start the GUI
#210 opened Sep 24, 2024 by bingnanzhao
Mod site for C-term modifications question Further information is requested
#209 opened Sep 24, 2024 by mo-sameh
IndexError: positional indexers are out-of-bounds,May kind people be blessed with life-long peace.
#207 opened Aug 28, 2024 by yanzhou-boy
Requirement to replace our pretrained RT model
#204 opened Aug 23, 2024 by jalew188
KeyError: 'Modified.Sequence'
#203 opened Aug 23, 2024 by yanzhou-boy
1
About zipfile.BadZipFile: File is not a zipfile problem
#200 opened Aug 19, 2024 by yanzhou-boy
1
Finetune a pretrained model on a new dataset without using mode_x to optimize performance for the new target.
#199 opened Aug 18, 2024 by shamimshahcheraghi
1
Can you issue a GUI guide
#198 opened Aug 16, 2024 by yanzhou-boy
FutureWarning: torch.load changed weights_only=False to weights_only=True
#195 opened Aug 12, 2024 by jalew188
The epoch parameter in scheduler.step() was not necessary and is being deprecated where possible
#194 opened Aug 10, 2024 by jalew188
@mo-sameh
1
Custom LR scheduler not supported
#191 opened Aug 1, 2024 by ErikHartman
1
peptdeep 1.2.1 not compatible with numpy 2.0.1
#190 opened Jul 25, 2024 by xgwang-uw
2
Tutorial: speclib
#187 opened Jul 17, 2024 by jalew188
@jalew188
A problem about the GUI page
#185 opened Jul 16, 2024 by jalew188
Tutorial: immunopeptidomics
#183 opened Jun 28, 2024 by jalew188
@wahlema
Copy transformer code from huggingface due to too many breaking changes
#178 opened Jun 25, 2024 by jalew188
@jalew188
peptdeep bug on linux - destination is read-only
#177 opened Jun 17, 2024 by timheymann
@GeorgWa
ModelManager.predict_all() modifies dataframe in place
#163 opened May 7, 2024 by GeorgWa
@jalew188
1
Supported fragmentlosstype?
#153 opened Apr 15, 2024 by hxxhust163
4
Missing the documentation on how to use the GUI to train a model for in-silico prediction
#149 opened Mar 19, 2024 by michaelsteidel86
3
Transfer learning to refine predicted library
#145 opened Feb 22, 2024 by snsipe
3
Library translate tsv: IndexError: index 4 is out of bounds for axis 1 with size 4
#142 opened Feb 6, 2024 by J-Burgess
1
Tuning MS2 by low-quality fragment matches on all DIA PSMs at apex_rt resulted in low-quality MS2 prediction
#124 opened Dec 31, 2023 by jalew188
1
ProTip! What’s not been updated in a month: updated:<2024-10-07.