add cli run to quicktests

MannLabs · Aug 12, 2024 · b98892b · b98892b
1 parent 2fbbc9d
commit b98892b
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/tests/run_quicktests.sh b/tests/run_quicktests.sh
@@ -4,5 +4,6 @@ python download_testfiles.py quicktest
 cd quicktests
 jupyter nbconvert --to script run_pipeline_w_different_input_formats.ipynb
 python run_pipeline_w_different_input_formats.py
+directlfq lfq -i ../../test_data/system_tests/quicktests/diann/shortened_input.tsv
 cd ..
 conda deactivate