HDF5 build fails #146
Workflow file for this run
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| name: Grid and Mesh Solver | |
| on: [push] | |
| env: | |
| PETSC_VERSION: '3.18.4' | |
| HOMEBREW_NO_ANALYTICS: 'ON' # Make Homebrew installation a little quicker | |
| HOMEBREW_NO_AUTO_UPDATE: 'ON' | |
| HOMEBREW_NO_BOTTLE_SOURCE_FALLBACK: 'ON' | |
| HOMEBREW_NO_GITHUB_API: 'ON' | |
| HOMEBREW_NO_INSTALL_CLEANUP: 'ON' | |
| jobs: | |
| gcc_ubuntu: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| gcc_v: [9, 10, 11, 12] | |
| fail-fast: false | |
| env: | |
| GCC_V: ${{ matrix.gcc_v }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: GCC - Install | |
| run: | | |
| sudo add-apt-repository ppa:ubuntu-toolchain-r/test | |
| sudo apt-get update | |
| sudo apt-get install -y gcc-${GCC_V} gfortran-${GCC_V} g++-${GCC_V} | |
| sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-${GCC_V} 100 \ | |
| --slave /usr/bin/gfortran gfortran /usr/bin/gfortran-${GCC_V} \ | |
| --slave /usr/bin/g++ g++ /usr/bin/g++-${GCC_V} \ | |
| --slave /usr/bin/gcov gcov /usr/bin/gcov-${GCC_V} | |
| - name: PETSc - Cache download | |
| id: petsc-download | |
| uses: actions/cache@v3 | |
| with: | |
| path: download | |
| key: petsc-${{ env.PETSC_VERSION }}.tar.gz | |
| - name: PETSc - Download | |
| if: steps.petsc-download.outputs.cache-hit != 'true' | |
| run: | | |
| wget -q https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${PETSC_VERSION}.tar.gz -P download | |
| - name: PETSc - Prepare | |
| run: | | |
| tar -xf download/petsc-${PETSC_VERSION}.tar.gz -C . | |
| export PETSC_DIR=${PWD}/petsc-${PETSC_VERSION} | |
| export PETSC_ARCH=gcc${GCC_V} | |
| printenv >> $GITHUB_ENV | |
| - name: PETSc - Cache Installation | |
| id: petsc-install | |
| uses: actions/cache@v3 | |
| with: | |
| path: petsc-${{ env.PETSC_VERSION }} | |
| key: petsc-${{ env.PETSC_VERSION }}-gcc${{ matrix.gcc_v }}-${{ hashFiles('**/petscversion.h') }} | |
| - name: PETSc - Installation | |
| run: | | |
| cd petsc-${PETSC_VERSION} | |
| ./configure --with-fc=gfortran --with-cc=gcc --with-cxx=g++ \ | |
| --download-openmpi --download-fftw --download-hdf5 --download-hdf5-fortran-bindings=1 --download-zlib \ | |
| --with-mpi-f90module-visibility=1 | |
| make all | |
| - name: DAMASK - Compile | |
| run: | | |
| cmake -B build/grid -DDAMASK_SOLVER=grid -DCMAKE_INSTALL_PREFIX=${PWD} | |
| cmake --build build/grid --parallel | |
| cmake --install build/grid | |
| cmake -B build/mesh -DDAMASK_SOLVER=mesh -DCMAKE_INSTALL_PREFIX=${PWD} | |
| cmake --build build/mesh --parallel | |
| cmake --install build/mesh | |
| - name: DAMASK - Run | |
| run: | | |
| ./bin/DAMASK_grid -l tensionX.yaml -g 20grains16x16x16.vti -m material.yaml -w examples/grid | |
| ./bin/DAMASK_mesh -h | |
| intel: | |
| runs-on: ubuntu-22.04 | |
| container: | |
| image: intel/oneapi-hpckit:latest | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Intel - Install | |
| run: | | |
| apt-get update --allow-insecure-repositories | |
| apt-get install --allow-unauthenticated -y \ | |
| cmake build-essential autoconf \ | |
| zlib1g | |
| printenv >> $GITHUB_ENV | |
| - name: PETSc - Cache download | |
| id: petsc-download | |
| uses: actions/cache@v3 | |
| with: | |
| path: download | |
| key: petsc-${{ env.PETSC_VERSION }}.tar.gz | |
| - name: PETSc - Download | |
| if: steps.petsc-download.outputs.cache-hit != 'true' | |
| run: | | |
| wget -q https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${PETSC_VERSION}.tar.gz -P download | |
| - name: PETSc - Prepare | |
| run: | | |
| tar -xf download/petsc-${PETSC_VERSION}.tar.gz -C . | |
| sed -i "1719s/if not os.path.isfile(os.path.join(self.packageDir,'configure')):/if True:/g" \ | |
| ./petsc-${PETSC_VERSION}/config/BuildSystem/config/package.py | |
| export PETSC_DIR=${PWD}/petsc-${PETSC_VERSION} | |
| export PETSC_ARCH=intel | |
| printenv >> $GITHUB_ENV | |
| - name: PETSc - Cache installation | |
| id: petsc-install | |
| uses: actions/cache@v3 | |
| with: | |
| path: petsc-${{ env.PETSC_VERSION }} | |
| key: petsc-${{ env.PETSC_VERSION }}-intel-${{ hashFiles('**/petscversion.h') }} | |
| - name: PETSc - Install | |
| run: | | |
| cd petsc-${PETSC_VERSION} | |
| ./configure \ | |
| --with-fc='mpiifort -fc=ifx' \ | |
| --with-cc='mpiicc -cc=icx' \ | |
| --with-cxx='mpiicpc -cxx=icpx' \ | |
| --download-fftw --download-hdf5 --download-hdf5-fortran-bindings=1 --download-zlib | |
| make all | |
| # ifx has issue with openMP | |
| # https://community.intel.com/t5/Intel-Fortran-Compiler/ifx-ICE-and-SEGFAULT/m-p/1459877 | |
| - name: DAMASK - Compile | |
| run: | | |
| cmake -B build/grid -DDAMASK_SOLVER=grid -DCMAKE_INSTALL_PREFIX=${PWD} -DOPENMP=OFF | |
| cmake --build build/grid --parallel | |
| cmake --install build/grid | |
| cmake -B build/mesh -DDAMASK_SOLVER=mesh -DCMAKE_INSTALL_PREFIX=${PWD} -DOPENMP=OFF | |
| cmake --build build/mesh --parallel | |
| cmake --install build/mesh | |
| - name: DAMASK - Run | |
| run: | | |
| ./bin/DAMASK_grid -l tensionX.yaml -g 20grains16x16x16.vti -m material.yaml -w examples/grid | |
| ./bin/DAMASK_mesh -h |