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Update documentation of AC$MASS_SPECTROMETRY: MS_TYPE and finish #403
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meier-rene committed Apr 11, 2024
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11 changes: 6 additions & 5 deletions Documentation/MassBankRecordFormat.md
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MS2
MS3
MS4
MS5
MSn
```

Brief definition of terms used in `MS_TYPE`:
* `MS2` is 1st generation product ion spectrum(of `MS`)
* `MS3` is 2nd generation product ion spectrum(of `MS`)
* `MS2` is the precursor ion spectrum of `MS3`*

Reference: [IUPAC Recommendations 2006](http://old.iupac.org/reports/provisional/abstract06/murray_prs.pdf)
* `MS` - [MS1 spectrum(MS:1000579)](https://terminology.tib.eu/ts/ontologies/ms/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMS_1000579)
* `MS2` - [MSn spectrum(MS:1000580)](https://terminology.tib.eu/ts/ontologies/ms/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMS_1000580)
* `MS3` - [MSn spectrum(MS:1000580)](https://terminology.tib.eu/ts/ontologies/ms/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMS_1000580) with [ms level(MS:1000511)](https://terminology.tib.eu/ts/ontologies/ms/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMS_1000580) = 3
* `MSn` - use for any other multi stage acquisition method, which does not fit in the above scheme, like merged MS spectra from different stages

#### <a name="2.4.4"></a>2.4.4 AC$MASS\_SPECTROMETRY: ION\_MODE
Polarity of Ion Detection. Mandatory
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