memote – the genome-scale metabolic model test suite

Easily run the memote command line tools from a docker container. You can find the main documentation on readthedocs.

Usage

The container exposes the memote command line tool. If you run the container without any arguments you will see the base help message.

docker run ghcr.io/metabolicatlas/memote-docker:0.13

For now, the best way to have memote interact with files is to mount a local directory into the container. The only hurdle is that you may have to afterwards change the permissions of the output file to your own user.

docker run -v ~/local/path/to/models/directory:/opt ghcr.io/metabolicatlas/memote-docker:0.13 memote run /opt/my-model.xml