GitHub - ModelDBRepository/34163: Enhanced Excitability in Hermissenda: modulation by 5-HT (Cai et al 2003)

ModelDBRepository / 34163 Public

Notifications You must be signed in to change notification settings
Fork 1
Star 0

Enhanced Excitability in Hermissenda: modulation by 5-HT (Cai et al 2003)

modeldb.science/34163

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
00note.txt		00note.txt
Ca.ion		Ca.ion
Ca2Ikca.fBR		Ca2Ikca.fBR
Dr.A		Dr.A
Dr.B		Dr.B
Dr.vdg		Dr.vdg
Ia.A		Ia.A
Ia.A_bak		Ia.A_bak
Ia.B		Ia.B
Ia.vdg		Ia.vdg
Ikca.A		Ikca.A
Ikca.B		Ikca.B
Ikca.vdg		Ikca.vdg
Ir.A		Ir.A
Ir.vdg		Ir.vdg
Na.A		Na.A
Na.B		Na.B
Na.vdg		Na.vdg
axona.neu		axona.neu
axona2axonb.es		axona2axonb.es
axonb.neu		axonb.neu
axonb2axonc.es		axonb2axonc.es
axonc.neu		axonc.neu
axonc2term.es		axonc2term.es
bph.ntw		bph.ntw
bph.ntw_genp		bph.ntw_genp
bph.ous		bph.ous
bph.ous2		bph.ous2
bph.ous3		bph.ous3
bph.ous4		bph.ous4
bph.ous_Ri		bph.ous_Ri
bph.ous_bak		bph.ous_bak
bph.ous_genp		bph.ous_genp
bph.ous_mod		bph.ous_mod
bph.ous_sp		bph.ous_sp
bph.ous_vclamp		bph.ous_vclamp
bph.smu		bph.smu
bph.trt		bph.trt
bph.trt0		bph.trt0
bph.trt_Drmod		bph.trt_Drmod
bph.trt_Iamod		bph.trt_Iamod
bph.trt_Ihmod		bph.trt_Ihmod
bph.trt_Ikcamod		bph.trt_Ikcamod
bph.trt_Ri		bph.trt_Ri
bph.trt_casmod		bph.trt_casmod
bph.trt_light		bph.trt_light
bph.trt_mixmod		bph.trt_mixmod
bph.trt_std		bph.trt_std
bph.trt_vclamp		bph.trt_vclamp
bph_Drmod.smu		bph_Drmod.smu
bph_Iamod.smu		bph_Iamod.smu
bph_Ihmod.smu		bph_Ihmod.smu
bph_Ikcamod.smu		bph_Ikcamod.smu
bph_Ri.smu		bph_Ri.smu
bph_casmod.smu		bph_casmod.smu
bph_genp.smu		bph_genp.smu
bph_mixmod.smu		bph_mixmod.smu
bph_stdmod.smu		bph_stdmod.smu
ca.A		ca.A
ca.B		ca.B
ca.vdg		ca.vdg
cat.A		cat.A
cat.B		cat.B
cat.vdg		cat.vdg
design.txt		design.txt
exp.es		exp.es
exp1.fnc		exp1.fnc
exp2.fnc		exp2.fnc
exp3.fnc		exp3.fnc
grf.def		grf.def
leak.vdg		leak.vdg
mv.neu		mv.neu
mv2soma.es		mv2soma.es
mvleak.vdg		mvleak.vdg
ousgrf.def		ousgrf.def
readme.txt		readme.txt
simufiles.usd		simufiles.usd
soma.neu		soma.neu
soma2axona.es		soma2axona.es
tCa.ion		tCa.ion
tCa2Ikca.fBR		tCa2Ikca.fBR
tDr.vdg		tDr.vdg
tIa.vdg		tIa.vdg
tIkca.vdg		tIkca.vdg
tIr.vdg		tIr.vdg
tNa.A		tNa.A
tNa.B		tNa.B
tNa.vdg		tNa.vdg
tca.vdg		tca.vdg
tcat.vdg		tcat.vdg
term.neu		term.neu
term.neu_bak		term.neu_bak
tleak.vdg		tleak.vdg
tmp.1		tmp.1
tmp.ps		tmp.ps
treatment.fnc		treatment.fnc
xaleak.vdg		xaleak.vdg
xbCa.ion		xbCa.ion
xbCa2Ikca.fBR		xbCa2Ikca.fBR
xbDr.vdg		xbDr.vdg

Repository files navigation

README.txt

This simulation reproduces the model published 
in:

Cai Y, Baxter DA, Crow T
Computational Study of Enhanced Excitability in Hermissenda:
Membrane Conductances Modulated by 5-HT
Journal of Computational Neuroscience 15, 105-121, 2003

Example use:

Start SNNAP (double click on the SNNAP.jar file)
click on "Run Simulation"
Then in the new window "File"->"Load Simulation"
browse to and load bph_mixmod.smu file to load a simulation
that creates a figure similar to Fig6C from the paper and click "Start"
See http://snnap.uth.tmc.edu/ to download SNNAP