Moved ASS and PP to other repos

MurrellGroup · Oct 30, 2023 · 3ab86f6 · 3ab86f6
1 parent f16ca51
commit 3ab86f6
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Showing 16 changed files with 7 additions and 534 deletions.
diff --git a/Project.toml b/Project.toml
@@ -1,16 +1,12 @@
 name = "BackBoner"
 uuid = "9ac9c2a2-1cfe-46d3-b3fd-6fa470ea56a7"
 authors = ["Anton Oresten"]
-version = "1.0.0-DEV"
+version = "0.0.1"
 
 [deps]
-ColorSchemes = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
-Colors = "5ae59095-9a9b-59fe-a467-6f913c188581"
-Dierckx = "39dd38d3-220a-591b-8e3c-4c3a8c710a94"
-GLMakie = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a"
+AssigningSecondaryStructure = "8ed43e74-60fb-4e11-99b9-91deed37aef7"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 PDBTools = "e29189f1-7114-4dbd-93d0-c5673a921a58"
-PaddedViews = "5432bcbf-9aad-5242-b902-cca2824c8663"
 
 [compat]
 julia = "1"

diff --git a/src/AssigningSecondaryStructure/AssigningSecondaryStructure.jl b/src/AssigningSecondaryStructure/AssigningSecondaryStructure.jl
diff --git a/src/AssigningSecondaryStructure/LICENSE b/src/AssigningSecondaryStructure/LICENSE
diff --git a/src/AssigningSecondaryStructure/dssp.jl b/src/AssigningSecondaryStructure/dssp.jl
diff --git a/src/AssigningSecondaryStructure/pdb.jl b/src/AssigningSecondaryStructure/pdb.jl
diff --git a/src/AssigningSecondaryStructure/ssclass.jl b/src/AssigningSecondaryStructure/ssclass.jl
diff --git a/src/AssigningSecondaryStructure/utils.jl b/src/AssigningSecondaryStructure/utils.jl
diff --git a/src/BackBoner.jl b/src/BackBoner.jl
@@ -2,11 +2,11 @@ module BackBoner
 
 using LinearAlgebra
 
-include("AssigningSecondaryStructure/AssigningSecondaryStructure.jl")
-import .AssigningSecondaryStructure as ASS
+import AssigningSecondaryStructure as ASS
 export ASS
 
-include("backbone/backbone.jl")
-include("visuals/visuals.jl")
+include("backbone.jl")
+include("oxygen.jl")
+include("ncaco.jl")
 
 end
diff --git a/src/backbone/backbone.jl → src/backbone.jl b/src/backbone/backbone.jl → src/backbone.jl
@@ -37,7 +37,4 @@ the number of columns selected (atoms selected per residue).
 """
 function unroll_atoms(bb::Backbone{A}, i=Colon()) where A
     return reshape(atom_coord_matrix(bb, i), 3, :)
-end
-
-include("oxygen.jl")
-include("ncaco.jl")
+end
diff --git a/src/backbone/ncaco.jl → src/ncaco.jl b/src/backbone/ncaco.jl → src/ncaco.jl
diff --git a/src/backbone/oxygen.jl → src/oxygen.jl b/src/backbone/oxygen.jl → src/oxygen.jl
diff --git a/src/visuals/render.jl b/src/visuals/render.jl