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Added Residue type with fields: index, backbone (the entire backbone of the parent chain), aa (amino acid), and ss (secondary structure).
Added the backbone_atom_coords function to get the coordinates of the backbone atoms of a residue, represented by a 3x4 matrix.
Added aavector field to Chain.
Chain is now a subtype of AbstractVector{Residue}.
The add_oxygens function no longer removes the last residue of a Backbone{3} when creating the Backbone{4}. Instead, it selects a random orientation for the oxygen atom of the last residue.
Secondary structure of chains are now represented by Chars according to the standard for DSSP classification.