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Mykrobe-tools

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  1. mykrobe mykrobe Public

    Antibiotic resistance prediction in minutes

    Python 106 28

  2. mykrobe-atlas mykrobe-atlas Public

    1

  3. mykrobe-atlas-api mykrobe-atlas-api Public

    Server API for Atlas

    JavaScript 1

  4. mykrobe-atlas-jsonschema mykrobe-atlas-jsonschema Public

    JSON Schemas associated with Mykrobe Atlas

    JavaScript 1

  5. clockwork clockwork Public

    Forked from iqbal-lab-org/clockwork

    CRyPTIC data processing pipelines

    HTML 1 1

  6. mykrobe-atlas-distance-data mykrobe-atlas-distance-data Public

    Pipelines and scripts for calculating genetic distance between samples

    Python 1

Repositories

Showing 10 of 28 repositories
  • mykrobe-data Public

    Data for mykrobe command line tool

    Mykrobe-tools/mykrobe-data’s past year of commit activity
    0 MIT 2 0 0 Updated Oct 1, 2024
  • mykrobe Public

    Antibiotic resistance prediction in minutes

    Mykrobe-tools/mykrobe’s past year of commit activity
    Python 106 MIT 28 16 2 Updated May 22, 2024
  • mccortex Public Forked from Phelimb/mccortex

    Cortex on steroids: for larger populations with better assembly

    Mykrobe-tools/mccortex’s past year of commit activity
    C 0 MIT 25 0 0 Updated Sep 27, 2023
  • mykrobe-atlas-tracking-api Public

    Sample tracking service for Mykrobe Atlas project

    Mykrobe-tools/mykrobe-atlas-tracking-api’s past year of commit activity
    Python 0 0 0 1 Updated Feb 15, 2023
  • mykrobe-atlas-distance-api Public
    Mykrobe-tools/mykrobe-atlas-distance-api’s past year of commit activity
    Python 0 0 3 1 Updated Feb 15, 2023
  • mykrobe-website Public
    Mykrobe-tools/mykrobe-website’s past year of commit activity
    JavaScript 0 0 0 1 Updated Nov 28, 2022
  • mykrobe-lineage-test Public

    Test species and lineage calls made by mykrobe

    Mykrobe-tools/mykrobe-lineage-test’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 6, 2022
  • mykrobe-atlas-k8 Public
    Mykrobe-tools/mykrobe-atlas-k8’s past year of commit activity
    Shell 0 0 0 1 Updated Jan 1, 2022
  • atlas_ena_curation Public

    Automated pipeline built on top of clockwork and the kmersearch-api for download and processing of tb samples from the ENA

    Mykrobe-tools/atlas_ena_curation’s past year of commit activity
    Python 0 0 0 0 Updated Dec 19, 2021
  • mykrobe-atlas-kmersearch-api Public
    Mykrobe-tools/mykrobe-atlas-kmersearch-api’s past year of commit activity
    Python 0 0 0 0 Updated Dec 17, 2021
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