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Fixed poor link rendering
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MOchiara authored Aug 19, 2024
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### Dark count re calibration

As mentioned in {numref} `mission-execution`, inter-calibrations between the gliders and CTD fluorescence sensors together with bottle samples of chlorophyll a are a fundamental tool in post recovery data processing. Additionally, to this, a further dark count correction is recommended when possible. Assuming no fluorescence signal in deeper waters, a deep-offset correction can be estimated. This is computed using the mean deep fluorescence (the deeper, the better) and can be subtracted from the data and used to further correct the results. This can be complex especially in study areas characterized by shallow waters, heavy resuspension, and overall complexity of the optical properties of the water column. Furthermore, when assessing this deep dark count offset, the contribution of deep sea red fluorescence on in situ dark counts should be determined. This can be done if the glider is equipped with reliable FDOM sensors {cite}`Xing2017`.
As mentioned in {numref}`mission-execution`, inter-calibrations between the gliders and CTD fluorescence sensors together with bottle samples of chlorophyll a are a fundamental tool in post recovery data processing. Additionally, to this, a further dark count correction is recommended when possible. Assuming no fluorescence signal in deeper waters, a deep-offset correction can be estimated. This is computed using the mean deep fluorescence (the deeper, the better) and can be subtracted from the data and used to further correct the results. This can be complex especially in study areas characterized by shallow waters, heavy resuspension, and overall complexity of the optical properties of the water column. Furthermore, when assessing this deep dark count offset, the contribution of deep sea red fluorescence on in situ dark counts should be determined. This can be done if the glider is equipped with reliable FDOM sensors {cite}`Xing2017`.

### Non photochemical quenching corrections

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