Test Self-Hosted Runner #12
Workflow file for this run
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| name: Test Self-Hosted Runner | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| start-aws-runner: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| contents: read | |
| outputs: | |
| mapping: ${{ steps.aws-start.outputs.mapping }} | |
| steps: | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| role-to-assume: arn:aws:iam::010438489691:role/GHARunnerAWS | |
| aws-region: us-east-2 | |
| - name: Create cloud runner | |
| id: aws-start | |
| uses: omsf-eco-infra/gha-runner@v0.2.0 | |
| with: | |
| provider: "aws" | |
| action: "start" | |
| aws_image_id: ami-0b7f661c228e6a4bb | |
| aws_instance_type: g4dn.xlarge | |
| aws_region_name: us-east-2 | |
| aws_home_dir: /home/ubuntu | |
| env: | |
| GH_PAT: ${{ secrets.GH_PAT }} | |
| self-hosted-test: | |
| runs-on: self-hosted | |
| timeout-minutes: 720 # 12 hours | |
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| env: | |
| OE_LICENSE: ${{ github.workspace }}/oe_license.txt | |
| needs: | |
| - start-aws-runner | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Print disk usage | |
| run: "df -h" | |
| - name: Print Docker details | |
| run: "docker version || true" | |
| - name: Check for nvidia-smi | |
| run: "nvidia-smi" | |
| - name: "Setup Micromamba" | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| environment-name: openfe_env | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - openeye-toolkits | |
| create-args: >- | |
| espaloma_charge==0.0.8 | |
| openeye-toolkits | |
| - name: "Check if OpenMM can get a GPU" | |
| run: python -m openmm.testInstallation | |
| - name: "Install GUFE from main@HEAD" | |
| run: python -m pip install --no-deps git+https://github.com/OpenFreeEnergy/gufe@main | |
| - name: "Install" | |
| run: python -m pip install --no-deps -e . | |
| - name: "Test imports" | |
| run: | | |
| # if we add more to this, consider changing to for + env vars | |
| python -Ic "import openfe; print(openfe.__version__)" | |
| - name: "Environment Information" | |
| run: | | |
| micromamba info | |
| micromamba list | |
| pip list | |
| - name: Test OE License & Write License to File | |
| env: | |
| OE_LICENSE_TEXT: ${{ secrets.OE_LICENSE }} | |
| run: | | |
| echo "${OE_LICENSE_TEXT}" > ${OE_LICENSE} | |
| python -c "import openeye; assert openeye.oechem.OEChemIsLicensed(), 'OpenEye license checks failed!'" | |
| - name: "Run tests" | |
| env: | |
| # Set the OFE_SLOW_TESTS to True if running a Cron job | |
| OFE_SLOW_TESTS: "true" | |
| DUECREDIT_ENABLE: 'yes' | |
| OFE_INTEGRATION_TESTS: TRUE | |
| run: | | |
| pytest -n 4 -v --durations=10 | |
| stop-aws-runner: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| contents: read | |
| needs: | |
| - start-aws-runner | |
| - self-hosted-test | |
| if: ${{ always() }} | |
| steps: | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| role-to-assume: arn:aws:iam::010438489691:role/GHARunnerAWS | |
| aws-region: us-east-2 | |
| - name: Stop instances | |
| uses: omsf-eco-infra/gha-runner@v0.2.0 | |
| with: | |
| provider: "aws" | |
| action: "stop" | |
| instance_mapping: ${{ needs.start-aws-runner.outputs.mapping }} | |
| aws_region_name: us-east-2 | |
| env: | |
| GH_PAT: ${{ secrets.GH_PAT }} |