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Fix start and end times for reading csv files #51

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merged 3 commits into from
Jul 16, 2024
Merged

Fix start and end times for reading csv files #51

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1e02f22
Get start and end times from csv if not found in info
Jul 10, 2024
72fc969
Update extracted column
Jul 10, 2024
3ee2329
Add extra line to pass tests
Jul 11, 2024
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7 changes: 5 additions & 2 deletions src/asleep/get_sleep.py
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Original file line number Diff line number Diff line change
Expand Up @@ -35,6 +35,9 @@
NON_WEAR_THRESHOLD = 3 # H
NON_WEAR_PREDICTION_FLAG = -1

START_TIME_IDX = 0
END_TIME_IDX = -1


def load_model(model_path, force_download=False):
""" Load trained model. Download if not exists. """
Expand Down Expand Up @@ -69,8 +72,8 @@ def get_parsed_data(raw_data_path, info_data_path, resample_hz, args):
data = data.reset_index()

# apply time shift
start_time = pd.to_datetime(info['StartTime'])
end_time = pd.to_datetime(info['EndTime'])
start_time = pd.to_datetime(info.get("StartTime", data["time"].iloc[START_TIME_IDX]))
end_time = pd.to_datetime(info.get("EndTime", data["time"].iloc[END_TIME_IDX]))
info['StartTime'] = start_time + datetime.timedelta(hours=time_shift)
info['EndTime'] = end_time + datetime.timedelta(hours=time_shift)
info['StartTime'] = info['StartTime'].strftime('%Y-%m-%d %H:%M:%S')
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