Minor changes to Tests and Spring 6.0.0

PRIDE-Archive · Oct 6, 2023 · e309c73 · e309c73
1 parent d123103
commit e309c73
Show file tree

Hide file tree

Showing 2 changed files with 7 additions and 7 deletions.
diff --git a/pom.xml b/pom.xml
@@ -72,12 +72,12 @@
         <dependency>
             <groupId>org.springframework</groupId>
             <artifactId>spring-web</artifactId>
-            <version>5.3.29</version>
+            <version>6.0.12</version>
         </dependency>
         <dependency>
             <groupId>org.springframework</groupId>
             <artifactId>spring-context-support</artifactId>
-            <version>5.3.29</version>
+            <version>6.0.12</version>
         </dependency>
         <dependency>
             <groupId>com.fasterxml.jackson.core</groupId>

diff --git a/src/test/java/uk/ac/ebi/pride/utilities/ols/web/service/client/OLSClientTest.java b/src/test/java/uk/ac/ebi/pride/utilities/ols/web/service/client/OLSClientTest.java
@@ -91,7 +91,7 @@ public void testGetTermChildrenByOBOIdMI() throws Exception {
     public void testGetTermParentsByOBOIdGo() throws Exception {
         List<Term> children = olsClient.getTermChildren(new Identifier("GO:0140110", Identifier.IdentifierType.OBO), "GO", 1);
         logger.debug(children.toString());
-        Assert.assertTrue(contains(children, new Identifier("GO:0034246", Identifier.IdentifierType.OBO)));
+        Assert.assertTrue(contains(children, new Identifier("GO:0043856", Identifier.IdentifierType.OBO)));
     }
 
     @Test
@@ -132,7 +132,7 @@ public void testGetTermsByAnnotationData() throws Exception {
     public void testGetTermParentsByOBOId() throws Exception {
         List<Term> parents = olsClient.getTermParents(new Identifier("GO:0034246", Identifier.IdentifierType.OBO), "GO", 1);
         logger.debug(parents.toString());
-        Assert.assertTrue(contains(parents, new Identifier("GO:0140110", Identifier.IdentifierType.OBO)));
+        Assert.assertTrue(contains(parents, new Identifier("GO:0003700", Identifier.IdentifierType.OBO)));
     }
 
     @Test
@@ -150,14 +150,14 @@ public void testGetTermParentsByOBOIdMI() throws Exception {
     public void testGetTermParentsByShortForm() throws Exception {
         List<Term> parents = olsClient.getTermParents(new Identifier("GO_0034246", Identifier.IdentifierType.OWL), "GO", 1);
         logger.debug(parents.toString());
-        Assert.assertTrue(contains(parents, new Identifier("GO_0140110", Identifier.IdentifierType.OWL)));
+        Assert.assertTrue(contains(parents, new Identifier("GO_0006390", Identifier.IdentifierType.OWL)));
     }
 
     @Test
     public void testGetTermParentsByIrIId() throws Exception {
         List<Term> parents = olsClient.getTermParents(new Identifier("http://purl.obolibrary.org/obo/GO_0034246", Identifier.IdentifierType.IRI), "GO", 1);
         logger.debug(parents.toString());
-        Assert.assertTrue(contains(parents, new Identifier("http://purl.obolibrary.org/obo/GO_0140110", Identifier.IdentifierType.IRI)));
+        Assert.assertTrue(contains(parents, new Identifier("http://purl.obolibrary.org/obo/GO_0003700", Identifier.IdentifierType.IRI)));
     }
 
     @Test
@@ -244,7 +244,7 @@ public void testGetOntologyFromFilePath(){
 //        Assert.assertEquals(ontology.getNamespace(),"eol");
 //        ontology = olsClient.getOntologyFromFilePath(URI.create("http://www.bio.ntnu.no/ontology/GeXO/gexo.owl"));
 //        Assert.assertEquals(ontology.getNamespace(),"gexo");
-        ontology = olsClient.getOntologyFromFilePath(URI.create("http://purl.obolibrary.org/obo/go.owl"));
+        ontology = olsClient.getOntologyFromFilePath(URI.create("http://purl.obolibrary.org/obo/go/extensions/go-plus.owl"));
         Assert.assertEquals(ontology.getNamespace(),"go");
     }