Adding annotation of potential doublets to anndata obs #865

	#schema: https://github.com/softprops/github-actions-schemas/blob/master/workflow.json
	name: "Build containers"

	on:
	push:
	branches: [main, dev]
	tags:
	- "v" # Push events to matching v, i.e. v1.0, v20.15.10
	pull_request:
	branches: [main, dev]
	workflow_dispatch:


	permissions:
	id-token: write
	actions: write
	contents: read
	packages: write


	jobs:
	pre_job:
	continue-on-error: true
	runs-on: ubuntu-latest
	# Map a step output to a job output
	outputs:
	should_skip: ${{ steps.skip_check.outputs.should_skip }}
	paths_result: ${{ steps.skip_check.outputs.paths_result }}
	steps:
	- id: skip_check
	uses: fkirc/skip-duplicate-actions@v5
	if: ${{ !github.event.act }}
	with:
	concurrent_skipping: "same_content_newer"
	skip_after_successful_duplicate: "true"
	do_not_skip: '["workflow_dispatch"]'
	paths_filter: \|
	python:
	paths:
	- 'pyproject.toml'
	- 'poetry.lock'
	- 'src/pixelator/**'

	build:
	name: "Build"
	runs-on: ubuntu-latest
	needs: [pre_job]
	if: needs.pre_job.outputs.paths_result == '{}' \|\| !fromJSON(needs.pre_job.outputs.paths_result).python.should_skip

	steps:
	- name: Checkout
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	fetch-tags: true

	- name: Set up build environment
	id: setup_build_env
	uses: ./.github/actions/setup-image-build-env

	- name: Build and push images
	id: build_image
	uses: ./.github/actions/build-dev-image
	with:
	cache-from: "type=registry,ref=ghcr.io/pixelgentechnologies/pixelator:dev-buildcache"
	cache-to: "type=registry,ref=ghcr.io/pixelgentechnologies/pixelator:dev-buildcache,mode=max"

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