Adding annotation of potential doublets to anndata obs #829
Workflow file for this run
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#schema: https://github.com/softprops/github-actions-schemas/blob/master/workflow.json | |
name: "Documentation" | |
on: | |
push: | |
branches: [main, dev] | |
pull_request: | |
branches: [main, dev] | |
workflow_dispatch: | |
permissions: | |
id-token: write | |
actions: write | |
contents: read | |
packages: write | |
env: | |
ANNOY_COMPILER_ARGS: "-DANNOYLIB_MULTITHREADED_BUILD,-mno-avx512f" | |
jobs: | |
pre_job: | |
continue-on-error: true | |
runs-on: ubuntu-latest | |
# Map a step output to a job output | |
outputs: | |
should_skip: ${{ steps.skip_check.outputs.should_skip }} | |
paths_result: ${{ steps.skip_check.outputs.paths_result }} | |
steps: | |
- id: skip_check | |
uses: fkirc/skip-duplicate-actions@v5 | |
if: ${{ !github.event.act }} | |
with: | |
concurrent_skipping: "same_content_newer" | |
skip_after_successful_duplicate: "true" | |
do_not_skip: '["workflow_dispatch"]' | |
paths_filter: | | |
main: | |
paths: | |
- 'src/pixelator/**' | |
- 'docs/**' | |
- '**/*.md' | |
- '**/*.rst' | |
docs: | |
name: "Build documentation" | |
runs-on: ubuntu-latest | |
needs: | |
- pre_job | |
if: needs.pre_job.outputs.should_skip == '{}' || !fromJSON(needs.pre_job.outputs.paths_result).main.should_skip | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
- name: Set up Python environment | |
uses: ./.github/actions/setup-python | |
with: | |
python-version: "3.11" | |
- name: Create dependencies file | |
run: | | |
pip install poetry | |
poetry export --output requirements.txt --without-hashes --no-interaction --no-ansi --with dev | |
pip install -r requirements.txt | |
- name: Sphinx Build | |
run: | | |
sphinx-build -b html docs docs/_build | |
- name: Archive documentation | |
uses: actions/upload-artifact@v3 | |
with: | |
name: documentation | |
path: | | |
docs/_build |