Merge pull request #24 from PixelgenTechnologies/release-0.15.0

chore(release): 0.15.0

.github/workflows/checks.yml

@@ -56,7 +56,7 @@ jobs:
       - name: Set up Python environment
         uses: ./.github/actions/setup-python
         with:
-          python-version: "3.10"
+          python-version: "3.11"
 
       - name: flake8 linter
         uses: py-actions/flake8@v2
@@ -109,7 +109,7 @@ jobs:
       - name: Set up Python environment
         uses: ./.github/actions/setup-python
         with:
-          python-version: "3.10"
+          python-version: "3.11"
 
       - name: Install dependencies
         run: |

.github/workflows/docs.yml

@@ -56,7 +56,7 @@ jobs:
       - name: Set up Python environment
         uses: ./.github/actions/setup-python
         with:
-          python-version: "3.10"
+          python-version: "3.11"
 
       - name: Create dependencies file
         run: |

.github/workflows/tests.yml

@@ -54,6 +54,7 @@ jobs:
       fail-fast: false
       matrix:
         py:
+          - "3.11"
           - "3.10"
           - "3.9"
           - "3.8"
@@ -112,7 +113,7 @@ jobs:
       - name: Set up Python environment
         uses: ./.github/actions/setup-python
         with:
-          python-version: "3.10"
+          python-version: "3.11"
 
       - uses: supplypike/setup-bin@v3
         with:

CHANGELOG.md

@@ -5,15 +5,18 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [0.15.0] - UNRELEASED
+## [0.15.0]- 2023-10-16
 
 ### Added
 
-* Add support for Python 3.11
+* Add support for Python 3.11.
+* Add early enablement work for a networkx backend for the graph stage.
 
 ### Fixed
 
-* A bug where aggregating data did not add the correct sample, and unique component columns
+* Fix report color axis in report figures not updating when selecting markers or cell types.
+* Remove placeholder links in report tooltips.
+* Fix a bug where aggregating data did not add the correct sample, and unique component columns.
 
 
 ## [0.14.0] - 2023-10-05

README.md

@@ -1,13 +1,13 @@
 # Pixelator
 
 
-![python-version](https://img.shields.io/badge/python-3.8%20%7C%203.9%20%7C%203.10-blue)
+![python-version](https://img.shields.io/badge/python-3.8%20%7C%203.9%20%7C%203.10%20%7C%203.11-blue)
 [![License: GPL v2](https://img.shields.io/badge/License-GPL_v2-blue.svg)](https://www.gnu.org/licenses/old-licenses/gpl-2.0.en.html)
+[![DOI](https://img.shields.io/badge/DOI-10.1101/2023.06.05.543770-B31B1B.svg)](https://www.biorxiv.org/content/10.1101/2023.06.05.543770v1)
+![conda](https://anaconda.org/bioconda/pixelator/badges/version.svg)
+![pypi](https://img.shields.io/pypi/v/pixelgen-pixelator)
 
-[//]: # (TODO: Enable this once available)
-[//]: # (![conda](https://anaconda.org/bioconda/pixelator/badges/version.svg))
-[//]: # (![pypi](https://img.shields.io/pypi/v/pixelgen-pixelator))
-
+[![Tests](https://github.com/PixelgenTechnologies/pixelator/actions/workflows/tests.yml/badge.svg)](https://github.com/PixelgenTechnologies/pixelator/actions/workflows/tests.yml)
 
 [**Documentation**](#documentation) |
 [**Installation**](#installation) |
@@ -69,6 +69,8 @@ pip install .
 
 ### Using docker
 
+
+
 The `pixelator` command-line tool can be run with docker images available on
 the [GitHub container registry](https://github.com/PixelgenTechnologies/pixelator/pkgs/container/pixelator).
 
@@ -77,6 +79,8 @@ docker pull ghcr.io/pixelgentechnologies/pixelator:latest
 docker run ghcr.io/pixelgentechnologies/pixelator:latest pixelator --help
 ```
 
+You can also use the containers provided by the biocontainers project on [quay.io](https://quay.io/repository/biocontainers/pixelator).
+
 ## Contributing
 
 Contribution are welcome!
@@ -115,4 +119,3 @@ A non-exhaustive list of contributors follows:
 
 - Filip Karlsson ([@fika-pixelgen](https://github.com/fika-pixelgen))
 - Max Karlsson ([@maxkarlsson](https://github.com/maxkarlsson))
-