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Adding annotation of potential doublets to anndata obs #193

Merged
merged 17 commits into from
Oct 22, 2024
Merged

Adding annotation of potential doublets to anndata obs #193

merged 17 commits into from
Oct 22, 2024

Commits on Oct 21, 2024

  1. adding annotation of potential doublets

    @ptajvar
    ptajvar committed Oct 21, 2024
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  2. split _compute_sub_communities from _assess_doublet

    @ptajvar
    ptajvar committed Oct 21, 2024
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  3. Added n_edges_to_split_potential_doublets

    @ptajvar
    ptajvar committed Oct 21, 2024
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  4. Reduced Leiden resolution by 0.5 in the annotation step

    @ptajvar
    ptajvar committed Oct 21, 2024
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  5. updated CHANGELOG.md

    @ptajvar
    ptajvar committed Oct 21, 2024
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  6. fix: set default values for fraction_potential_doublets and n_edges_t… 

    …o_split_potential_doublets
    @ptajvar
    ptajvar committed Oct 21, 2024
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  7. fix: make fraction_potential_doublets non-optional

    @ptajvar
    ptajvar committed Oct 21, 2024
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Commits on Oct 22, 2024

  1. Update src/pixelator/pixeldataset/utils.py 

    Co-authored-by: Johan Dahlberg <johan.dahlberg@pixelgen.tech>
    @ptajvar @johandahlberg
    ptajvar and johandahlberg authored Oct 22, 2024
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  2. Update src/pixelator/pixeldataset/utils.py 

    Co-authored-by: Johan Dahlberg <johan.dahlberg@pixelgen.tech>
    @ptajvar @johandahlberg
    ptajvar and johandahlberg authored Oct 22, 2024
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  3. Update src/pixelator/pixeldataset/utils.py 

    Co-authored-by: Johan Dahlberg <johan.dahlberg@pixelgen.tech>
    @ptajvar @johandahlberg
    ptajvar and johandahlberg authored Oct 22, 2024
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  4. Update src/pixelator/pixeldataset/utils.py 

    Co-authored-by: Johan Dahlberg <johan.dahlberg@pixelgen.tech>
    @ptajvar @johandahlberg
    ptajvar and johandahlberg authored Oct 22, 2024
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  5. fix: typo

    @ptajvar
    ptajvar committed Oct 22, 2024
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  6. added RELATIVE_ANNOTATE_RESOLUTION as a constant

    @ptajvar
    ptajvar committed Oct 22, 2024
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  7. make fraction_potential_doublets and n_edges_to_split_potential_doubl… 

    …ets optional
    @ptajvar
    ptajvar committed Oct 22, 2024
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  8. set default fraction_potential_doublets and n_edges_to_split_potentia… 

    …l_doublets to None
    @ptajvar
    ptajvar committed Oct 22, 2024
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  9. explicitly check n_edges_to_split_doublet exists before using sum

    @ptajvar
    ptajvar committed Oct 22, 2024
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  10. fix: typecheck

    @ptajvar
    ptajvar committed Oct 22, 2024
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