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@fbdtemme fbdtemme released this 05 Oct 10:56
· 932 commits to dev since this release
v0.14.0
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fbdtemme Florian De Temmerman
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Learn about vigilant mode.
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Learn about vigilant mode.

[0.14.0] - 2023-10-05

Added

  • Lazy option for edge list loading (pixeldataset.edgelist_lazy), which returns a
    polars LazyFrame that can be used to operate on the edge list without reading
    all of it into memory.
  • Option (ignore_edgelists) to skip the edge lists when aggregating files. This defaults
    to False.

Changed

  • Types on the edge list in memory will utilize the pandas category type for string, and
    uint16 for numeric values to lower the memory consumption when working with the
    edge list
  • Remove --pbs1 and --pbs2 commandline arguments to pixelator single-cell adapterqc.
  • Restructure report figures.
  • Improve metric names and tooltips in the report.
  • Synchronize zoom level between the scatter plots in cell annotations section of the report.
  • Add report placeholder for missing cell annotation data
  • Add Fraction of discarded UMIs and Avg. Reads per Molecule metrics to the report.

Fixed

  • Fix an issue where pixelator --version would return 0.0.0 when installing in editable mode.
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