Ome-Converter: Update to bfio v2.3.3 and filepattern v2.0.4 #17
Workflow file for this run
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| name: Package tests | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| - dev | |
| permissions: | |
| contents: read | |
| jobs: | |
| package-filter: | |
| name: Filter for updated package | |
| uses: ./.github/workflows/package-filter.yml | |
| tests: | |
| name: Test "${{ matrix.package_name }}" | |
| needs: package-filter | |
| strategy: | |
| matrix: ${{fromJson(needs.package-filter.outputs.matrix)}} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - name: Install Poetry | |
| uses: abatilo/actions-poetry@v2 | |
| - name: Install pre-commit | |
| run: | | |
| pip install pre-commit | |
| - name: Run pre-commit hooks and check for changes | |
| run: | | |
| cd "${{ matrix.package_dir }}" | |
| poetry run pre-commit run --files ./**/** | |
| if [[ $(git status --porcelain) ]] | |
| then | |
| echo "::error::pre-commit hooks failed for ${{ matrix.package_name }}" && exit 1 | |
| fi | |
| - name: Run tests | |
| run: | | |
| package_dir=${{ matrix.package_dir }} | |
| cd $package_dir | |
| poetry install | |
| poetry run pytest -v | |
| docker: | |
| name: Build Docker images | |
| needs: [package-filter, tests] | |
| uses: ./.github/workflows/docker.yml | |
| with: | |
| matrix: ${{ needs.package-filter.outputs.matrix }} | |
| push: false | |
| secrets: | |
| DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} | |
| DOCKER_PASSWORD: ${{ secrets.DOCKER_TOKEN }} |