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fix: fix invalid plugin manifests #525

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merged 6 commits into from
Apr 4, 2024
Merged

fix: fix invalid plugin manifests #525

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36c0680
fix: fix local manifests
camilovelezr Mar 14, 2024
40e1f8b
fix: fix author in binary-operations-tool manifest
camilovelezr Mar 14, 2024
736aad1
fix: fixed inputs/ui in manifest of k-means-clustering
camilovelezr Mar 14, 2024
e4912d3
fix: fixed key name of getDarkfield in ui basicflatfieldestimation
camilovelezr Mar 14, 2024
c77cbe4
fix: fixed ui in generalizedlinearmodel manifest
camilovelezr Mar 14, 2024
7253b36
fix: fix trailing comma in author region-segmentation-eval
camilovelezr Mar 14, 2024
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14 changes: 7 additions & 7 deletions clustering/k-means-clustering-tool/plugin.json
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
"version": "0.3.5-dev0",
"title": "K-Means Clustering",
"description": "Cluster the data using K-Means.",
"author": "Jayapriya Nagarajan (jayapriya.nagarajan@nih.gov), Kelechi Nina Mezu (nina.mezu@nih.gov) Hamdah Shafqat Abbasi (hamdahshafqat.abbasi@nih.gov)",
"author": "Jayapriya Nagarajan (jayapriya.nagarajan@nih.gov), Kelechi Nina Mezu (nina.mezu@nih.gov), Hamdah Shafqat Abbasi (hamdahshafqat.abbasi@nih.gov)",
"institution": "National Center for Advancing Translational Sciences, National Institutes of Health",
"repository": "https://github.com/polusai/polus-plugins",
"website": "https://ncats.nih.gov/preclinical/core/informatics",
Expand Down Expand Up @@ -59,6 +59,12 @@
"type": "number",
"description": "Number of clusters:",
"required": "false"
},
{
"name": "preview",
"type": "boolean",
"description": "Output a JSON preview of outputs produced by this plugin",
"required": "false"
}
],
"outputs": [
Expand Down Expand Up @@ -103,12 +109,6 @@
"title": "Enter number of clusters",
"description": "Number of clusters:",
"condition": "model.inputs.methods==Manual"
},
{
"key": "inputs.fileExtension",
"title": "FileExtension",
"description": "Desired file format of an ouput file",
"default": ".arrow"
}
]
}
45 changes: 28 additions & 17 deletions clustering/outlier-removal-tool/plugin.json
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Original file line number Diff line number Diff line change
Expand Up @@ -14,20 +14,23 @@
"-m",
"polus.images.clustering.outlier_removal"
],
"inputs": {
"inpDir": {
"inputs": [
{
"name": "inpDir",
"type": "genericData",
"title": "Input tabular data",
"description": "Input tabular data.",
"required": "True"
},
"filePattern": {
{
"name": "filePattern",
"type": "string",
"title": "Filename pattern",
"description": "Filename pattern used to separate data.",
"required": "False"
},
"method": {
{
"name": "method",
"type": "enum",
"title": "Methods",
"description": "Select methods for outlier removal",
Expand All @@ -40,7 +43,8 @@
},
"required": "False"
},
"outputType": {
{
"name": "outputType",
"type": "enum",
"title": "outputType",
"description": "Select type of output file",
Expand All @@ -54,52 +58,59 @@
},
"required": "False"
},
"preview": {
{
"name": "preview",
"type": "boolean",
"title": "Preview",
"description": "Generate an output preview.",
"required": "False"
}
},
"outputs": {
"outDir": {
],
"outputs": [
{
"name": "outDir",
"type": "genericData",
"description": "Output collection."
}
},
"ui": {
"inpDir": {
],
"ui": [
{
"key": "inputs.inpDir",
"type": "genericData",
"title": "Input tabular data",
"description": "Input tabular data to be processed by this plugin.",
"required": "True"
},
"filePattern": {
{
"key": "inputs.filePattern",
"type": "string",
"title": "Filename pattern",
"description": "Filename pattern used to separate data.",
"required": "False",
"default": ".*"
},
"method": {
{
"key": "inputs.method",
"type": "enum",
"title": "method",
"description": "Select method for outlier removal.",
"required": "False",
"default": "IsolationForest"
},
"outputType": {
{
"key": "inputs.outputType",
"type": "enum",
"title": "outputType",
"description": "Select output type.",
"required": "False",
"default": "inlier"
},
"preview": {
{
"key": "inputs.preview",
"type": "boolean",
"title": "Preview",
"description": "Generate an output preview.",
"required": "False"
}
}
]
}
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