Pin versions for compatibility with dolfinx 0.9.0 #1585
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| name: RBniCSx CI | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: "0 5 * * *" | |
| workflow_call: | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| include: | |
| - backend: dolfinx-real | |
| container: ghcr.io/fenics/dolfinx/dolfinx:v0.9.0 | |
| setup_container: | | |
| . /usr/local/bin/dolfinx-real-mode | |
| echo "PETSC_ARCH=$PETSC_ARCH" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV | |
| echo "PKG_CONFIG_PATH=$PKG_CONFIG_PATH" >> $GITHUB_ENV | |
| echo "CMAKE_PREFIX_PATH=$CMAKE_PREFIX_PATH" >> $GITHUB_ENV | |
| rm /dolfinx-env/lib/python3.12/site-packages/petsc4py/py.typed | |
| - backend: dolfinx-complex | |
| container: ghcr.io/fenics/dolfinx/dolfinx:v0.9.0 | |
| setup_container: | | |
| . /usr/local/bin/dolfinx-complex-mode | |
| echo "PETSC_ARCH=$PETSC_ARCH" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV | |
| echo "PKG_CONFIG_PATH=$PKG_CONFIG_PATH" >> $GITHUB_ENV | |
| echo "CMAKE_PREFIX_PATH=$CMAKE_PREFIX_PATH" >> $GITHUB_ENV | |
| rm /dolfinx-env/lib/python3.12/site-packages/petsc4py/py.typed | |
| fail-fast: false | |
| container: | |
| image: ${{ matrix.container }} | |
| options: --user root | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: dolfinx-v0.9.0 | |
| - name: Setup container | |
| run: ${{ matrix.setup_container }} | |
| - name: Install RBniCSx | |
| run: | | |
| python3 -m pip install --check-build-dependencies --no-build-isolation --config-settings=build-dir="build" --config-settings=cmake.build-type="Debug" --verbose .[docs,lint,tests,tutorials] | |
| shell: bash | |
| - name: Clean build files | |
| run: | | |
| git config --global --add safe.directory $PWD | |
| git clean -xdf | |
| - name: Run ruff on python files | |
| run: | | |
| python3 -m ruff check . | |
| - name: Run isort on python files | |
| run: | | |
| python3 -m isort --check --diff . | |
| - name: Run mypy on python files | |
| run: | | |
| python3 -m mypy --exclude=conftest.py . | |
| python3 -m mypy tests/unit/conftest.py | |
| python3 -m mypy tutorials/conftest.py | |
| - name: Run yamllint on workflows | |
| run: | | |
| python3 -m yamllint -d "{extends: default, rules: {document-start: {present: false}, line-length: disable, truthy: {check-keys: false}}}" . | |
| - name: Run clang-format on C++ files | |
| run: | | |
| wget https://raw.githubusercontent.com/FEniCS/dolfinx/main/.clang-format | |
| find . -type f \( -name "*.cpp" -o -name "*.h" \) | xargs clang-format --dry-run --Werror | |
| - name: Run cmake-format on cmake files | |
| run: | | |
| wget https://raw.githubusercontent.com/FEniCS/dolfinx/main/.cmake-format | |
| find . -type f \( -name "*.cmake" -o -name "*.cmake.in" -o -name "CMakeLists.txt" \) | xargs cmake-format --check | |
| - name: Run documentation generation | |
| run: | | |
| cd docs | |
| python3 -m sphinx -W -b html . build/html | |
| shell: bash | |
| - name: Remove source directory to ensure that package from installation directory is used | |
| run: | | |
| rm -rf rbnicsx | |
| - name: Run unit tests (serial) | |
| run: | | |
| COVERAGE_UNIT_OMIT="" | |
| PYTEST_UNIT_OPTIONS="" | |
| COVERAGE_FILE=.coverage_unit_serial python3 -m coverage run --source=rbnicsx --omit="${COVERAGE_UNIT_OMIT}" -m pytest ${PYTEST_UNIT_OPTIONS} tests/unit | |
| - name: Run unit tests (parallel) | |
| run: | | |
| COVERAGE_UNIT_OMIT="" | |
| PYTEST_UNIT_OPTIONS="" | |
| COVERAGE_FILE=.coverage_unit_parallel mpirun -n 2 python3 -m coverage run --source=rbnicsx --parallel-mode --omit="${COVERAGE_UNIT_OMIT}" -m pytest ${PYTEST_UNIT_OPTIONS} tests/unit | |
| - name: Combine coverage reports | |
| run: | | |
| python3 -m coverage combine .coverage* | |
| python3 -m coverage report --fail-under=100 --show-missing --skip-covered | |
| - name: Generate tutorial files | |
| run: | | |
| NO_TESTS_COLLECTED=5 | |
| python3 -m pytest --ipynb-action=create-notebooks tutorials || (($?==$NO_TESTS_COLLECTED)) | |
| python3 -m pytest --ipynb-action=create-notebooks --tag-collapse tutorials || (($?==$NO_TESTS_COLLECTED)) | |
| python3 -m pytest --ipynb-action=create-notebooks --np=2 tutorials || (($?==$NO_TESTS_COLLECTED)) | |
| python3 -m pytest --ipynb-action=create-notebooks --tag-collapse --np=2 tutorials || (($?==$NO_TESTS_COLLECTED)) | |
| shell: bash | |
| - name: Run ruff on tutorial files | |
| run: | | |
| python3 -m nbqa ruff . | |
| - name: Run isort on tutorial files | |
| run: | | |
| python3 -m nbqa isort --check --diff . | |
| - name: Run mypy on tutorial files | |
| run: | | |
| python3 -m nbqa mypy . | |
| - name: Check for stray outputs, counts and metadata in tutorial files | |
| uses: RBniCS/check-jupyter-metadata-action@main | |
| with: | |
| pattern: "tutorials/**/*.ipynb" | |
| - name: Run tutorials (serial) | |
| run: | | |
| python3 -m pytest --tag-collapse --durations=0 --durations-min=1.0 tutorials | |
| - name: Run tutorials (parallel) | |
| run: | | |
| python3 -m pytest --tag-collapse --np=2 --durations=0 --durations-min=1.0 tutorials | |
| - name: Upload tutorials logs as an artifact in case of failure | |
| if: failure() || cancelled() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: "tutorials-logs-${{ matrix.backend }}" | |
| path: | | |
| tutorials/**/.ipynb_pytest/**/*.log* | |
| include-hidden-files: true |