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59 report tlf. closes #59
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--- | ||
title: "R Consortium R Submission Pilot 3 - Summary Tables and Figures" | ||
author: "Pilot 3 Team" | ||
date: "`r Sys.Date()`" | ||
output: | ||
pdf_document: | ||
latex_engine: pdflatex | ||
header-includes: | ||
- \usepackage{pdfpages} | ||
--- | ||
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Note : In Pilot 3, following the same approach as Pilot1, different open-source packages were used when generating each of the 4 analysis outputs to test wider use case scenarios. The outputs were formatted differently intentionally to cover different company specific formatting choices. | ||
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\newpage | ||
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```{r path, echo=FALSE} | ||
path <- list( | ||
sdtm = "./submission/sdtm", # Modify path to the sdtm location | ||
adam = "./submission/adam", # Modify path to the adam location | ||
output = "./submission/output" # Modify path to the output location | ||
) | ||
``` | ||
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#### Table 14-2.01 | ||
#### Summary of Demographic and Baseline Characteristics | ||
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```{r demog, out.width = "40%", out.height = "400px", echo=FALSE, message=FALSE, comment=NA} | ||
setwd("/cloud/project") | ||
source("/cloud/project/submission/programs/tlf-demographic.r") | ||
print(tbl) | ||
``` | ||
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\newpage | ||
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#### Table 14-3.01 | ||
#### Primary Endpoint Analysis: ADAS Cog (11) - Change from Baseline to Week 24 - LOCF | ||
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```{r primary, echo=FALSE, message=FALSE, comment=NA} | ||
# setwd("/cloud/project") | ||
# source("/cloud/project/submission/programs/tlf-primary.r") | ||
``` | ||
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\hfill\break\hfill\break\hfill\break\includegraphics[page=1]{/cloud/project/submission/output/tlf-primary-pilot3.rtf.pdf} | ||
\ | ||
\ | ||
\hfill\break\hfill\break\hfill\break\includegraphics[page=2]{/cloud/project/submission/output/tlf-primary-pilot3.rtf.pdf} | ||
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\newpage | ||
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#### Table 14-3.02 | ||
#### Primary Endpoint Analysis: Glucose (mmol/L) - Summary at Week 20 - LOCF | ||
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```{r efficacy, echo=FALSE, message=FALSE, comment=NA} | ||
# setwd("/cloud/project") | ||
# source("/cloud/project/submission/programs/tlf-efficacy.r") | ||
# print(tbl) | ||
``` | ||
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\includegraphics[page=1]{/cloud/project/submission/output/tlf-efficacy-pilot3.rtf.pdf} | ||
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\newpage | ||
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#### Figure 14-1 | ||
#### Time to Dermatologic Event by Treatment Group | ||
\ | ||
\ | ||
```{r plot, echo=FALSE, message=FALSE, comment=NA, fig.align="center",out.width="100%"} | ||
setwd("/cloud/project") | ||
source("/cloud/project/submission/programs/tlf-kmplot.r") | ||
print(km) | ||
``` | ||
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