A simple snakemake workflow comparing three genomes.
Run it like so:
snakemake -j 4 --use-conda
This repo provides a snakemake workflow that uses sourmash to compare three genomes and generate a similarity matrix. All of the necessary software is installed by conda.
The snakemake workflow is described in the Snakefile.
The required software is listed in binder/environment.yml.
