Bioinformatician researching single-cell transcriptomics, metagenomics, and bulk RNA-seq. I build reproducible pipelines to help answer biological questions.
About Me fields
π I'm currently working on: Single-cell metatranscriptomics pipeline detecting phage induction in the rumen microbiome
π€ I'm looking to collaborate on: Microbiome & single-cell genomics, oncology, applied ML in biology
π§βπ€βπ§ I'm looking for help with: Full-time bioinformatics roles in the US
π± I'm currently learning: Scaling pipelines beyond a single dataset, using AI to automate bioinformatics workflows
π¬ Ask me about: Bioinformatics, statistics, machine learning, data viz
β‘ Fun fact: I'm a twin ! She's interested in business, i am interested biology :)
Bioinformatician exploring viromes, metagenomes, and single cells. I like messy data, pipelines, and contributing to science.
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Ye Lab
- United States
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19:49
(UTC -12:00) - https://www.linkedin.com/in/sanyukta-chapagain/
Popular repositories Loading
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Cancer-nanoparticle-optimization
Cancer-nanoparticle-optimization Public3D tumor spheroid simulation of nanoparticle drug delivery strategies using PhysiCell/pc4nanobio (C++)
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ML-ibd
ML-ibd PublicSnakemake pipeline classifying IBD from gut microbiome composition across 4 independent cohorts. Tests for cohort-driven bias and validates every model with leave-one-cohort-out testinggeneralizes β¦
R
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