ML analysis to predict C. difficile colonization in fecal communities of IBD & control mice.
See config/README.md for instructions on running this workflow.
View the main manuscript repository here: barronmr/antip40_microbiota
To cite the paper, please use:
Barron MR, Sovacool KL, Abernathy-Close L, Vendrov KC, Standke AK, Bergin IL, Schloss PD, Young VB. 2022. Intestinal Inflammation Reversibly Alters the Microbiota to Drive Susceptibility to Clostridioides difficile Colonization in a Mouse Model of Colitis. mBio 0:e01904-22.
A bibtex entry for LaTeX users:
@article{barron_intestinal_2022,
title = {Intestinal {{Inflammation Reversibly Alters}} the {{Microbiota}} to {{Drive Susceptibility}} to {{Clostridioides}} Difficile {{Colonization}} in a {{Mouse Model}} of {{Colitis}}},
author = {Barron, Madeline R. and Sovacool, Kelly L. and {Abernathy-Close}, Lisa and Vendrov, Kimberly C. and Standke, Alexandra K. and Bergin, Ingrid L. and Schloss, Patrick D. and Young, Vincent B.},
year = {2022},
month = {jul},
journal = {mBio},
volume = {0},
number = {0},
pages = {e01904-22},
publisher = {{American Society for Microbiology}},
doi = {10.1128/mbio.01904-22},
copyright = {All rights reserved}
}