Singularity doesn't work with the Snakemake action

SchlossLab · Jan 31, 2023 · cf3011e · cf3011e
1 parent 9362651
commit cf3011e
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/.github/workflows/run-snakemake.yml b/.github/workflows/run-snakemake.yml
@@ -26,7 +26,7 @@ jobs:
         with:
           directory: .
           snakefile: workflow/Snakefile
-          args: "archive --cores 16 --use-singularity --use-conda --conda-frontend mamba --show-failed-logs --configfile ${{ inputs.configfile }}"
+          args: "archive --cores 16 --use-conda --conda-frontend mamba --show-failed-logs --configfile ${{ inputs.configfile }}"
       - name: Upload logs on failure
         uses: actions/upload-artifact@v3
         if: failure()
@@ -39,4 +39,4 @@ jobs:
           name: workflow-results
           path: workflow_*.zip
           if-no-files-found: warn
-
+