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Merge pull request #27 from ScilifelabDataCentre/influenza_ww
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Add Influenza to wastewater cron
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LianeHughes authored Aug 24, 2023
2 parents 2d35145 + c512efb commit d631875
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4 changes: 4 additions & 0 deletions runner_every10mins.sh
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Expand Up @@ -9,6 +9,10 @@ PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PAT
PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/gothenburg_covid.py > "$CODE_PATH"/output/wastewater_gothenburg.json
# Enteric virus GU
PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/enteric_viruses_gu.py > "$CODE_PATH"/output/enteric_graph_gu.json
# Influenza virus SLU
PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/combined_slu_influenza_a.py > "$CODE_PATH"/output/wastewater_slu_infA.json
PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/combined_slu_influenza_b.py > "$CODE_PATH"/output/wastewater_slu_infB.json


# Upload generated files
for filename in $(ls $CODE_PATH/output) ; do
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