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Add demo of installing Bioconductor packages
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akochari authored Sep 25, 2023
1 parent 13847f4 commit 3891ee5
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6 changes: 5 additions & 1 deletion Dockerfile
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Expand Up @@ -6,7 +6,11 @@ RUN apt-get update && \
apt-get install -y git libxml2-dev libmagick++-dev && \
rm -rf /var/lib/apt/lists/*

RUN Rscript -e 'install.packages(c("shiny","tidyverse"))'
# Command to install standard R packages from CRAN; enter the list of required packages for your app here
RUN Rscript -e 'install.packages(c("shiny","tidyverse","BiocManager"))'

# Command to install packages from Bioconductor; enter the list of required Bioconductor packages for your app here
RUN Rscript -e 'BiocManager::install(c("Biostrings"),ask = F)'

COPY /app/ /srv/shiny-server/app

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