Title: The Cloud and the Shell - Applied Bioinformatics on the Example of Gene Expression Analysis using Unix and freely available Open Source Tools
Author: Alexander Kerner
EMail: training at silico-sciences.com
Seminar Ruprecht-Karls-Universität Heidelberg

Applied Bioinformatics in the Cloud and in the Shell

RNA-Seq Analysis Using Unix and Open Source Tools

In this seminar, you will get a first insight into NGS data processing and analysis.

The tools that will be used are all open source and freely available; as well as the data.

Part 1: RNA-Seq using Galaxy, IGV and the Tuxedo Suite

Part 2: Preparations

Part 3: Data Visualization using RStudio and CummeRbund

Part 3: Introduction to the Shell

Part 4: The Shell for Bioinformaticians

Part 5: RNA-Seq using the Shell, IGV and the Tuxedo Suite