Memory Folder & README Tweaks

• Removed all folders in Memory folder except for the BLAST folder as there's no longer need for them.
• Added a dev warning to README file.

Structure update

Features:

• Rewritten most of the main code to fit a class-based structure (instead of a file-based one).
• Now supports SI appliance & double-genelist conversion (the latter not tested) on many files at once.
• All libraries and directories moved to a 3rd script to reduce load time and make it easier to configure and read.
• Wayyyyyyyy cleaner code.
• More optimization.
• SI adds filler genes to fill up the place of missing genes in genelist and behaves as though they were asterisks.
• Better printed description in console

Bug fixes:

• Fixed SI algorithm.
• Fixed “-Else, -Locations2” Bug.
• Fixed a bug where multiple genes in a genelist2 would have the same location number, which made the genelist2 un-SI-able.

Issues:

• Useless SI accuracy.
• Logging doesn't work.
• SI sometimes raises a BLAST error.

v0.1.0-alpha2

Nothing works, still in progress. Uploaded for testing

Pre Release 1

In this update:

• Syntin Deed has a bunch of functions to analyze and manipulate inputted genome files.
• Syntin Deed now works without crashing midway through the execution.
• Multiprocessing has been partially added.

The program is still basically unoptimized and not very stable. It might crash if you give it an unexpected input and it won't report why.
Log files are empty.