Merge pull request #136 from KrisThielemans/Mediso_NEMA_IQ_lowcounts

added Mediso_NEMA_IQ_lowcounts
SyneRBI · Oct 21, 2024 · ea45096 · ea45096
2 parents fc60374 + 2d43a0a
commit ea45096
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Showing 2 changed files with 8 additions and 5 deletions.
diff --git a/SIRF_data_preparation/dataset_settings.py b/SIRF_data_preparation/dataset_settings.py
@@ -6,7 +6,7 @@
 DATA_SUBSETS = {
     'Siemens_mMR_NEMA_IQ': 7, 'Siemens_mMR_NEMA_IQ_lowcounts': 7, 'Siemens_mMR_ACR': 7, 'NeuroLF_Hoffman_Dataset': 16,
     'Mediso_NEMA_IQ': 12, 'Siemens_Vision600_thorax': 5, 'GE_DMI3_Torso': 8, 'Siemens_Vision600_Hoffman': 5,
-    'NeuroLF_Esser_Dataset': 8, 'Siemens_Vision600_ZrNEMAIQ': 5, 'GE_D690_NEMA_IQ': 16}
+    'NeuroLF_Esser_Dataset': 8, 'Siemens_Vision600_ZrNEMAIQ': 5, 'GE_D690_NEMA_IQ': 16, 'Mediso_NEMA_IQ_lowcounts': 6}
 
 
 @dataclass

diff --git a/petric.py b/petric.py
@@ -292,9 +292,10 @@ def get_image(fname):
     'Siemens_mMR_NEMA_IQ': {'transverse_slice': 72, 'coronal_slice': 109, 'sagittal_slice': 89},
     'Siemens_mMR_NEMA_IQ_lowcounts': {'transverse_slice': 72, 'coronal_slice': 109, 'sagittal_slice': 89},
     'Siemens_mMR_ACR': {'transverse_slice': 99}, 'NeuroLF_Hoffman_Dataset': {'transverse_slice': 72},
-    'Mediso_NEMA_IQ': {'transverse_slice': 22, 'coronal_slice': 89, 'sagittal_slice': 66},
-    'Siemens_Vision600_thorax': {}, 'GE_DMI3_Torso': {}, 'Siemens_Vision600_Hoffman': {}, 'NeuroLF_Esser_Dataset': {},
-    'Siemens_Vision600_ZrNEMAIQ': {'transverse_slice': 60}, 'GE_D690_NEMA_IQ': {'transverse_slice': 23}}
+    'Mediso_NEMA_IQ': {'transverse_slice': 22, 'coronal_slice': 89, 'sagittal_slice': 66
+                       }, 'Siemens_Vision600_thorax': {}, 'GE_DMI3_Torso': {}, 'Siemens_Vision600_Hoffman': {},
+    'NeuroLF_Esser_Dataset': {}, 'Siemens_Vision600_ZrNEMAIQ': {'transverse_slice': 60},
+    'GE_D690_NEMA_IQ': {'transverse_slice': 23}, 'Mediso_NEMA_IQ_lowcounts': {'transverse_slice': 22}}
 
 if SRCDIR.is_dir():
     # create list of existing data
@@ -321,7 +322,9 @@ def get_image(fname):
         (SRCDIR / "Siemens_Vision600_ZrNEMAIQ", OUTDIR / "Vision600_ZrNEMA",
          [MetricsWithTimeout(outdir=OUTDIR / "Vision600_ZrNEMA", **DATA_SLICES['Siemens_Vision600_ZrNEMAIQ'])]),
         (SRCDIR / "GE_D690_NEMA_IQ", OUTDIR / "D690_NEMA",
-         [MetricsWithTimeout(outdir=OUTDIR / "D690_NEMA", **DATA_SLICES['GE_D690_NEMA_IQ'])])]
+         [MetricsWithTimeout(outdir=OUTDIR / "D690_NEMA", **DATA_SLICES['GE_D690_NEMA_IQ'])]),
+        (SRCDIR / "Mediso_NEMA_IQ_lowcounts", OUTDIR / "Mediso_NEMA_lowcounts",
+         [MetricsWithTimeout(outdir=OUTDIR / "Mediso_NEMA_lowcounts", **DATA_SLICES['Mediso_NEMA_IQ_lowcounts'])])]
 else:
     log.warning("Source directory does not exist: %s", SRCDIR)
     data_dirs_metrics = [(None, None, [])] # type: ignore