Mouse 1.8.0

• Features (commit fc769ac):
  • update Human-GEM template to ver 1.18.0

Mouse 1.7.0

• Features:
  • update ortholog pairs from Alliance of Genomes to ver 6.0.0 (commit 432d3b0)
  • update Human-GEM template to ver 1.17.0

Mouse 1.6.0

• Fixes (commit 6dc2a71):
  • modify met ids to avoid potential conflict with Human-GEM
• Features:
  • update Human-GEM template to ver 1.16.0

Mouse 1.5.0

• Fixes (commit a4962bf):
  • change reaction IDs conflicting to recent changes to Human-GEM
• Features:
  • update ortholog pairs from Alliance of Genomes to ver 5.4.0 (commit 142f7b8)
  • update Human-GEM template to ver 1.15.0
• Style (commit a4962bf):
  • add gene names to new field geneShortNames, as suggested in #24

Mouse 1.4.0

• Fixes (PR 460):
  • fix: correct MAM03882 annotation, as reported in #21
• Fixes (PR 429):
  • feat: add Acod1(Irg1) gene and associated reaction, as discussed in #20
• Features:
  • update ortholog pairs from Alliance of Genomes to ver 5.3.0 (commit 89cb840)
  • update Human-GEM template to ver 1.14.0
• Style (commit 6580599):
  • change human-mouse ortholog file from json to tsv, as discussed in #15

Mouse 1.3.1

• Remove additional annotation information from .mat and .yml model files (PR #18)
  • resolves issue #16
• Sync model with latest version of Human-GEM (now v1.12.0)
  • done automatically by running masterScriptMouseGEM script

Mouse 1.3.0

• Fixes (PR 382):
  • resolved issues reported in #11, #12, #13 through Human-GEM PR 382
• Fixes (commit 88826a8):
  • revised compartment abbreviation from p to x, to sync with changes made in Human-GEM PR 341
• Features (commit f74fd2b):
  • updated ortholog pairs from Alliance of Genomes to the latest version 5.1.0
• Style (PR #9):
  • added .gitattributes to ensure consistent LF (\n) line endings
  • added citation
  • renamed branches: master --> main, devel --> develop

Mouse 1.2.0

• Features (commit 43bb829):
  • update GEM generating script by using function updateAnimalGEM and providing annotation files in tsv format
• Style (commit 1246db3):
  • apply MA format met/rxn identifiers in alignment with Human-GME v1.8
• Style (commit a0bb881):
  • add metsNoComp column to mouseSpecificMets.tsv

Mouse 1.1.0

• Style (PR #6):
  • update .standard-GEM.md file according to the spec of standard-GEM ver 0.5
• Features (commit b7a4c06):
  • include a gap-filling step for essential metabolic tasks
• Features (commit 534aabf):
  • add ascorbate transport rxn to allow Vitamin C biosynthesis

Mouse 1.0.0

• Features (PR #3):
  • add code masterScriptMouseGEM for the reconstruction of Mouse-GEM
• Features (PR #2):
  • upload data files
    • mouse-specific pathways in mouseSpecificRxns.tsv and mouseSpecificMets.tsv
    • ortholog pairs from Alliance of Genomes ver 3.1.1
    • MSigDB gene sets for mouse (ver 7.0)
• Features (PR #1):
  • update README according to the spec defined in standard-GEM ver 0.5