add to the output the FASTA sequence build from the VCFs as requested…

… in #35
TRON-Bioinformatics · Nov 18, 2022 · 4ef6bb8 · 4ef6bb8
1 parent a73408b
commit 4ef6bb8
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/modules/07_lineage_annotation.nf b/modules/07_lineage_annotation.nf
@@ -38,6 +38,7 @@ process VCF2FASTA {
     cpus params.cpus
     memory params.memory
     tag "${name}"
+    publishDir "${params.output}", mode: "copy"
 
     conda (params.enable_conda ? "conda-forge::gsl=2.7 bioconda::bcftools=1.14" : null)