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<article class="bd-article" role="main">

<h1>Source code for cil.framework.BlockDataContainer</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.framework.BlockGeometry</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.framework.framework</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2018 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2018 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2018 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.io.NEXUSDataReader</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.io.NEXUSDataWriter</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.io.NikonDataReader</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.io.RAWFileWriter</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2023 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2023 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2023 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.io.TIFF</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2020 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2020 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2020 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.io.ZEISSDataReader</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2022 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2022 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2022 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.io.utilities</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2023 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2023 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2023 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.algorithms.ADMM</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2020 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2020 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2020 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.algorithms.CGLS</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.algorithms.FISTA</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.algorithms.GD</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.algorithms.PDHG</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.algorithms.SIRT</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.algorithms.SPDHG</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2020 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2020 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2020 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<article class="bd-article" role="main">

<h1>Source code for cil.optimisation.functions.BlockFunction</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<article class="bd-article" role="main">

<h1>Source code for cil.optimisation.functions.Function</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.functions.IndicatorBox</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.functions.KullbackLeibler</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.functions.L1Norm</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.functions.L2NormSquared</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<article class="bd-article" role="main">

<h1>Source code for cil.optimisation.functions.LeastSquares</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2018 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2018 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2018 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<article class="bd-article" role="main">

<h1>Source code for cil.optimisation.functions.MixedL21Norm</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<article class="bd-article" role="main">

<h1>Source code for cil.optimisation.functions.OperatorCompositionFunction</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<article class="bd-article" role="main">

<h1>Source code for cil.optimisation.functions.Rosenbrock</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<article class="bd-article" role="main">

<h1>Source code for cil.optimisation.functions.TotalVariation</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2020 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2020 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2020 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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<h1>Source code for cil.optimisation.operators.BlockOperator</h1><div class="highlight"><pre>
<span></span><span class="c1"># -*- coding: utf-8 -*-</span>
<span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span></span><span class="c1"># Copyright 2019 United Kingdom Research and Innovation</span>
<span class="c1"># Copyright 2019 The University of Manchester</span>
<span class="c1">#</span>
<span class="c1"># Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span>
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